Experiment: Ying_sugar7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF773 and GFF774 are separated by 155 nucleotides GFF774 and GFF775 are separated by 80 nucleotides GFF775 and GFF776 are separated by 47 nucleotides GFF776 and GFF777 are separated by 199 nucleotides
GFF773 - Thioredoxin reductase (EC 1.8.1.9), at 466,150 to 467,097
GFF773
GFF774 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 467,253 to 467,927
GFF774
GFF775 - Cell division protein FtsK, at 468,008 to 470,365
GFF775
GFF776 - Outer membrane lipoprotein carrier protein LolA, at 470,413 to 471,051
GFF776
GFF777 - FIG065221: Holliday junction DNA helicase, at 471,251 to 472,354
GFF777
Position (kb) 468
469
470
471 Strain fitness (log2 ratio) -2
-1
0
1 at 467.133 kb on + strand at 467.146 kb on + strand at 467.146 kb on + strand at 467.146 kb on + strand at 467.146 kb on + strand at 467.146 kb on + strand at 467.146 kb on + strand at 467.147 kb on - strand at 467.147 kb on - strand at 467.147 kb on - strand at 467.147 kb on - strand at 467.147 kb on - strand at 467.148 kb on + strand at 467.148 kb on + strand at 467.148 kb on + strand at 467.148 kb on + strand at 467.148 kb on + strand at 467.149 kb on - strand at 467.149 kb on - strand at 467.149 kb on - strand at 467.149 kb on - strand at 467.149 kb on - strand at 467.149 kb on - strand at 467.149 kb on - strand at 467.149 kb on - strand at 467.208 kb on + strand at 467.208 kb on + strand at 467.208 kb on + strand at 467.209 kb on - strand at 467.209 kb on - strand at 467.209 kb on - strand at 467.246 kb on + strand at 467.246 kb on + strand at 467.246 kb on + strand at 467.246 kb on + strand at 467.246 kb on - strand at 467.247 kb on - strand at 467.247 kb on - strand at 467.247 kb on - strand at 467.247 kb on - strand at 467.249 kb on - strand at 467.496 kb on + strand, within GFF774 at 467.496 kb on + strand, within GFF774 at 467.496 kb on + strand, within GFF774 at 467.496 kb on + strand, within GFF774 at 467.496 kb on + strand, within GFF774 at 467.496 kb on + strand, within GFF774 at 467.496 kb on + strand, within GFF774 at 467.497 kb on - strand, within GFF774 at 467.628 kb on + strand, within GFF774 at 467.706 kb on + strand, within GFF774 at 467.707 kb on - strand, within GFF774 at 467.707 kb on - strand, within GFF774 at 467.978 kb on + strand at 468.007 kb on + strand at 468.007 kb on + strand at 468.007 kb on + strand at 468.008 kb on - strand at 468.014 kb on + strand at 468.015 kb on - strand at 469.964 kb on + strand, within GFF775 at 469.965 kb on - strand, within GFF775 at 470.229 kb on - strand at 470.229 kb on - strand at 471.230 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 1 remove 467,133 + -0.8 467,146 + +0.3 467,146 + -0.4 467,146 + +0.3 467,146 + +0.0 467,146 + +0.3 467,146 + -0.3 467,147 - +0.6 467,147 - -0.1 467,147 - -0.2 467,147 - +0.5 467,147 - +1.4 467,148 + +0.4 467,148 + +0.9 467,148 + -0.5 467,148 + +0.2 467,148 + -1.6 467,149 - -0.1 467,149 - +0.3 467,149 - -1.3 467,149 - -0.2 467,149 - -0.7 467,149 - -0.3 467,149 - -0.8 467,149 - +0.0 467,208 + +0.2 467,208 + +1.0 467,208 + +0.7 467,209 - -0.3 467,209 - -2.1 467,209 - -0.5 467,246 + +0.1 467,246 + +0.4 467,246 + -0.8 467,246 + +0.1 467,246 - -0.1 467,247 - +0.1 467,247 - +0.7 467,247 - +0.8 467,247 - -0.1 467,249 - +0.3 467,496 + GFF774 0.36 -0.1 467,496 + GFF774 0.36 -1.3 467,496 + GFF774 0.36 +0.9 467,496 + GFF774 0.36 -0.3 467,496 + GFF774 0.36 -0.3 467,496 + GFF774 0.36 -0.1 467,496 + GFF774 0.36 -0.1 467,497 - GFF774 0.36 +1.5 467,628 + GFF774 0.56 -0.3 467,706 + GFF774 0.67 -0.2 467,707 - GFF774 0.67 -0.2 467,707 - GFF774 0.67 +0.9 467,978 + +0.1 468,007 + -1.2 468,007 + -0.0 468,007 + -0.7 468,008 - +0.7 468,014 + +0.3 468,015 - -1.6 469,964 + GFF775 0.83 -2.1 469,965 - GFF775 0.83 -1.9 470,229 - -0.1 470,229 - -1.1 471,230 - +0.3
Or see this region's nucleotide sequence