Experiment: Ying_sugar7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF728 and GFF729 are separated by 25 nucleotides GFF729 and GFF730 are separated by 162 nucleotides GFF730 and GFF731 are separated by 9 nucleotides
GFF728 - DNA polymerase IV (EC 2.7.7.7), at 407,084 to 408,325
GFF728
GFF729 - L-lactate dehydrogenase (EC 1.1.2.3), at 408,351 to 409,502
GFF729
GFF730 - hypothetical protein, at 409,665 to 409,976
GFF730
GFF731 - putative exported protein, at 409,986 to 410,972
GFF731
Position (kb) 408
409
410 Strain fitness (log2 ratio) -1
0
1
2 at 407.520 kb on + strand, within GFF728 at 407.520 kb on + strand, within GFF728 at 407.520 kb on + strand, within GFF728 at 407.520 kb on + strand, within GFF728 at 407.520 kb on + strand, within GFF728 at 407.521 kb on - strand, within GFF728 at 407.521 kb on - strand, within GFF728 at 407.521 kb on - strand, within GFF728 at 407.862 kb on + strand, within GFF728 at 407.862 kb on + strand, within GFF728 at 407.862 kb on + strand, within GFF728 at 407.863 kb on - strand, within GFF728 at 407.863 kb on - strand, within GFF728 at 408.076 kb on - strand, within GFF728 at 408.147 kb on + strand, within GFF728 at 408.147 kb on + strand, within GFF728 at 408.147 kb on + strand, within GFF728 at 408.325 kb on + strand at 408.326 kb on - strand at 408.361 kb on + strand at 408.361 kb on + strand at 408.500 kb on - strand, within GFF729 at 408.500 kb on - strand, within GFF729 at 408.520 kb on + strand, within GFF729 at 408.520 kb on + strand, within GFF729 at 408.521 kb on - strand, within GFF729 at 409.114 kb on + strand, within GFF729 at 409.115 kb on - strand, within GFF729 at 409.430 kb on - strand at 409.433 kb on + strand at 409.435 kb on + strand at 409.436 kb on - strand at 409.767 kb on + strand, within GFF730 at 409.767 kb on + strand, within GFF730 at 409.767 kb on + strand, within GFF730 at 409.768 kb on - strand, within GFF730 at 409.768 kb on - strand, within GFF730 at 409.768 kb on - strand, within GFF730 at 409.932 kb on + strand, within GFF730 at 409.933 kb on - strand, within GFF730 at 410.077 kb on + strand at 410.078 kb on - strand at 410.078 kb on - strand at 410.200 kb on + strand, within GFF731 at 410.200 kb on + strand, within GFF731 at 410.200 kb on + strand, within GFF731 at 410.201 kb on - strand, within GFF731 at 410.201 kb on - strand, within GFF731 at 410.491 kb on + strand, within GFF731 at 410.492 kb on - strand, within GFF731 at 410.492 kb on - strand, within GFF731 at 410.498 kb on - strand, within GFF731
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 1 remove 407,520 + GFF728 0.35 -0.7 407,520 + GFF728 0.35 +1.1 407,520 + GFF728 0.35 +0.4 407,520 + GFF728 0.35 -0.3 407,520 + GFF728 0.35 +1.4 407,521 - GFF728 0.35 -0.7 407,521 - GFF728 0.35 -1.3 407,521 - GFF728 0.35 -0.4 407,862 + GFF728 0.63 -0.5 407,862 + GFF728 0.63 +0.1 407,862 + GFF728 0.63 +0.0 407,863 - GFF728 0.63 -0.8 407,863 - GFF728 0.63 +0.7 408,076 - GFF728 0.80 +0.1 408,147 + GFF728 0.86 -1.7 408,147 + GFF728 0.86 -0.2 408,147 + GFF728 0.86 +1.0 408,325 + -0.1 408,326 - -0.5 408,361 + -0.7 408,361 + +1.8 408,500 - GFF729 0.13 -0.0 408,500 - GFF729 0.13 -0.9 408,520 + GFF729 0.15 -0.3 408,520 + GFF729 0.15 +1.3 408,521 - GFF729 0.15 -0.5 409,114 + GFF729 0.66 -0.3 409,115 - GFF729 0.66 +0.2 409,430 - -0.5 409,433 + -0.2 409,435 + -0.3 409,436 - -0.2 409,767 + GFF730 0.33 +0.3 409,767 + GFF730 0.33 -0.2 409,767 + GFF730 0.33 -0.4 409,768 - GFF730 0.33 +0.7 409,768 - GFF730 0.33 -0.5 409,768 - GFF730 0.33 +0.2 409,932 + GFF730 0.86 -0.6 409,933 - GFF730 0.86 +0.8 410,077 + -1.0 410,078 - -0.3 410,078 - -0.1 410,200 + GFF731 0.22 +1.8 410,200 + GFF731 0.22 -0.1 410,200 + GFF731 0.22 -0.2 410,201 - GFF731 0.22 +1.5 410,201 - GFF731 0.22 +0.1 410,491 + GFF731 0.51 +1.0 410,492 - GFF731 0.51 -0.0 410,492 - GFF731 0.51 -0.5 410,498 - GFF731 0.52 -0.1
Or see this region's nucleotide sequence