Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF592

Experiment: Ying_sugar7 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF590 and GFF591 are separated by 69 nucleotidesGFF591 and GFF592 are separated by 209 nucleotidesGFF592 and GFF593 are separated by 141 nucleotides GFF590 - Sugar kinases, ribokinase family, at 261,968 to 262,852 GFF590 GFF591 - Low-complexity acidic protein, XCC2875 type, at 262,922 to 263,452 GFF591 GFF592 - Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1), at 263,662 to 264,846 GFF592 GFF593 - Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1), at 264,988 to 267,939 GFF593 Position (kb) 263 264 265Strain fitness (log2 ratio) -1 0 1at 262.842 kb on - strandat 262.842 kb on - strandat 262.842 kb on - strandat 264.950 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 1
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262,842 - -1.6
262,842 - -1.0
262,842 - -1.0
264,950 + -0.5

Or see this region's nucleotide sequence