Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5520

Experiment: Ying_sugar7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 1
2,523,041	+				-0.5
2,523,041	+				+0.5
2,523,041	+				+0.3
2,523,041	+				-1.7
2,523,042	-				+0.7
2,523,042	-				-0.2
2,523,042	-				+0.9
2,523,128	+				-0.5
2,523,128	+				-0.7
2,523,129	-				+0.1
2,523,129	-				+0.4
2,523,135	+				+0.5
2,523,136	-				+0.3
2,523,136	-				-0.0
2,523,160	+				-0.6
2,523,188	+				-0.2
2,523,189	-				+0.6
2,523,189	-				+0.9
2,523,189	-				+0.4
2,523,189	-				+0.2
2,523,190	+				-0.1
2,523,190	+				-0.1
2,523,190	+				-1.7
2,523,191	-				-0.4
2,523,191	-				+0.9
2,523,191	-				-0.3
2,523,206	+				+0.2
2,523,206	+				+0.5
2,523,206	+				-0.7
2,523,249	-				-0.4
2,523,249	-				-0.1
2,523,249	-				-0.2
2,523,250	+				+1.1
2,523,250	+				+0.7
2,523,250	+				+0.1
2,523,250	+				-0.2
2,523,250	+				+0.4
2,523,250	+				+0.0
2,523,250	+				+0.3
2,523,250	+				+0.9
2,523,250	+				-0.2
2,523,251	-				+0.5
2,523,251	-				+0.2
2,523,251	-				+0.3
2,523,251	-				+0.5
2,523,251	-				+0.3
2,523,251	-				+0.4
2,523,251	-				+0.3
2,523,292	+				+0.8
2,523,292	+				+0.5
2,523,292	+				-0.2
2,523,292	+				-0.0
2,523,292	+				+1.3
2,523,292	+				+0.5
2,523,292	+				+0.3
2,523,293	-				+0.7
2,523,293	-				-0.4
2,523,602	+		GFF5520	0.41	-0.1
2,523,602	+		GFF5520	0.41	+1.0
2,523,602	+		GFF5520	0.41	+0.1
2,523,602	+		GFF5520	0.41	+0.6
2,523,602	+		GFF5520	0.41	+0.9
2,523,602	+		GFF5520	0.41	+1.0
2,523,602	+		GFF5520	0.41	-0.7
2,523,602	+		GFF5520	0.41	-0.3
2,523,603	-		GFF5520	0.41	+0.1
2,523,603	-		GFF5520	0.41	+0.7
2,523,603	-		GFF5520	0.41	+0.6
2,523,603	-		GFF5520	0.41	+0.2
2,523,603	-		GFF5520	0.41	+0.2
2,523,603	-		GFF5520	0.41	+1.7
2,523,673	+		GFF5520	0.51	+0.8
2,523,674	-		GFF5520	0.51	-0.3
2,523,674	-		GFF5520	0.51	-0.1
2,523,674	-		GFF5520	0.51	+0.2
2,523,893	+		GFF5520	0.82	-0.0
2,523,893	+		GFF5520	0.82	+0.2
2,523,893	+		GFF5520	0.82	+0.4
2,523,893	+		GFF5520	0.82	+0.7
2,523,893	+		GFF5520	0.82	+0.2
2,523,893	+		GFF5520	0.82	+1.0
2,523,893	+		GFF5520	0.82	+0.3
2,523,894	-		GFF5520	0.82	+0.2
2,523,894	-		GFF5520	0.82	+0.7
2,523,894	-		GFF5520	0.82	+0.6
2,523,894	-		GFF5520	0.82	-0.4
2,523,894	-		GFF5520	0.82	+0.3
2,523,894	-		GFF5520	0.82	+0.7
2,523,941	+		GFF5520	0.89	+0.3
2,523,941	+		GFF5520	0.89	+0.3
2,523,959	+				+0.2
2,523,959	+				+0.7
2,523,960	-				+0.5
2,523,960	-				+1.5
2,524,135	-				+0.3
2,524,135	-				+0.4
2,524,135	-				+0.6
2,524,135	-				+0.2
2,524,177	+				+0.7
2,524,177	+				+0.6
2,525,002	+		GFF5521	0.56	+0.1
2,525,003	-		GFF5521	0.56	-0.2