Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4844

Experiment: Ying_sugar7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 1
1,851,607	-				+2.0
1,851,607	-				+0.2
1,851,646	-				-0.6
1,851,798	+		GFF4843	0.24	+1.3
1,851,802	-		GFF4843	0.24	-0.6
1,851,802	-		GFF4843	0.24	+0.7
1,851,802	-		GFF4843	0.24	-0.1
1,851,837	+		GFF4843	0.29	+0.8
1,851,838	-		GFF4843	0.29	+0.5
1,851,876	+		GFF4843	0.34	+0.6
1,851,877	-		GFF4843	0.34	-1.5
1,851,877	-		GFF4843	0.34	+0.1
1,851,877	-		GFF4843	0.34	+0.4
1,851,918	+		GFF4843	0.40	+0.7
1,851,963	+		GFF4843	0.46	-0.0
1,852,094	-		GFF4843	0.64	-1.0
1,852,134	+		GFF4843	0.69	-0.5
1,852,512	-		GFF4844	0.12	-1.1
1,852,547	-		GFF4844	0.15	-0.3
1,852,610	+		GFF4844	0.19	+0.3
1,852,731	-		GFF4844	0.29	+0.4
1,852,775	+		GFF4844	0.32	-0.9
1,852,781	+		GFF4844	0.33	+0.4
1,852,781	+		GFF4844	0.33	+0.3
1,852,782	-		GFF4844	0.33	-0.0
1,852,842	-		GFF4844	0.37	+0.5
1,852,842	-		GFF4844	0.37	-0.1
1,852,880	+		GFF4844	0.40	-0.1
1,852,881	-		GFF4844	0.40	-1.4
1,852,881	-		GFF4844	0.40	-0.1
1,852,950	-		GFF4844	0.46	-0.6
1,852,950	-		GFF4844	0.46	-0.2
1,852,950	-		GFF4844	0.46	+0.1
1,853,064	-		GFF4844	0.54	-0.6
1,853,064	-		GFF4844	0.54	-0.8
1,853,243	+		GFF4844	0.68	+0.6
1,853,243	+		GFF4844	0.68	-0.1
1,853,244	-		GFF4844	0.68	+0.0
1,853,244	-		GFF4844	0.68	-0.4
1,853,403	-		GFF4844	0.80	-0.1
1,853,553	-				-0.0
1,853,573	+				-1.1
1,853,573	+				-0.2
1,853,573	+				-0.3
1,853,573	+				-0.9
1,853,573	+				+0.7
1,853,573	+				-0.0
1,853,573	+				-0.3
1,853,573	+				+0.4
1,853,573	+				-1.2
1,853,574	-				+0.1
1,853,574	-				-0.9
1,853,574	-				-0.1
1,853,574	-				-0.4
1,853,574	-				-0.1
1,853,574	-				+0.8
1,853,574	-				+1.0
1,853,574	-				-0.0
1,854,137	+		GFF4846	0.20	-0.3
1,854,269	+		GFF4846	0.39	+0.2
1,854,270	-		GFF4846	0.39	-0.2
1,854,270	-		GFF4846	0.39	-0.1