Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4732

Experiment: Ying_sugar7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 1
1,684,438	-		GFF4731	0.41	-5.4
1,684,452	+		GFF4731	0.42	-4.1
1,684,453	-		GFF4731	0.42	-2.5
1,684,453	-		GFF4731	0.42	-4.8
1,684,464	+		GFF4731	0.43	-4.6
1,684,590	+		GFF4731	0.52	-5.1
1,684,590	+		GFF4731	0.52	-3.4
1,684,591	-		GFF4731	0.52	-3.6
1,684,591	-		GFF4731	0.52	-5.3
1,684,591	-		GFF4731	0.52	-3.5
1,684,591	-		GFF4731	0.52	-3.8
1,684,591	-		GFF4731	0.52	-3.1
1,684,591	-		GFF4731	0.52	-5.9
1,684,659	+		GFF4731	0.57	-0.8
1,684,659	+		GFF4731	0.57	-1.3
1,684,659	+		GFF4731	0.57	-4.8
1,684,659	+		GFF4731	0.57	-3.2
1,684,659	+		GFF4731	0.57	-1.9
1,684,660	-		GFF4731	0.58	-6.0
1,684,660	-		GFF4731	0.58	-3.7
1,684,782	+		GFF4731	0.67	-2.5
1,684,782	+		GFF4731	0.67	-2.6
1,684,783	-		GFF4731	0.67	-1.0
1,684,783	-		GFF4731	0.67	-2.3
1,684,885	-		GFF4731	0.75	-5.3
1,684,885	-		GFF4731	0.75	-2.7
1,684,885	-		GFF4731	0.75	-6.2
1,684,929	+		GFF4731	0.78	-3.9
1,684,929	+		GFF4731	0.78	-2.4
1,684,929	+		GFF4731	0.78	-4.6
1,684,929	+		GFF4731	0.78	-3.0
1,684,929	+		GFF4731	0.78	-3.3
1,684,929	+		GFF4731	0.78	-6.5
1,684,929	+		GFF4731	0.78	-2.2
1,684,929	+		GFF4731	0.78	-2.2
1,684,929	+		GFF4731	0.78	-1.9
1,684,929	+		GFF4731	0.78	-5.2
1,684,929	+		GFF4731	0.78	-4.7
1,684,930	-		GFF4731	0.78	-5.0
1,684,930	-		GFF4731	0.78	-4.1
1,684,930	-		GFF4731	0.78	-3.4
1,684,930	-		GFF4731	0.78	-3.6
1,685,082	+		GFF4731	0.89	-4.2
1,685,082	+		GFF4731	0.89	-4.1
1,685,083	-		GFF4731	0.89	-1.5
1,685,083	-		GFF4731	0.89	-4.0
1,685,083	-		GFF4731	0.89	-1.2
1,685,083	-		GFF4731	0.89	-4.4
1,685,083	-		GFF4731	0.89	-6.0
1,685,193	+				-2.6
1,685,193	+				-6.8
1,685,193	+				-4.5
1,685,193	+				-1.8
1,685,193	+				-2.2
1,685,193	+				-5.4
1,685,193	+				-3.9
1,685,193	+				-1.9
1,685,193	+				-3.5
1,685,193	+				-3.1
1,685,193	+				-5.4
1,685,193	+				-2.9
1,685,193	+				-3.0
1,685,193	+				-7.1
1,685,194	-				-5.7
1,685,194	-				-0.5
1,685,194	-				-4.0
1,685,194	-				-1.9
1,685,194	-				-2.4
1,685,194	-				-4.9
1,685,194	-				-6.5
1,685,204	+				-4.9
1,685,204	+				-6.1
1,685,204	+				-5.7
1,685,205	-				-1.9
1,685,242	+				-0.1
1,685,243	-				+2.1
1,685,264	+				+1.3
1,685,265	-				+0.5
1,685,306	+				-1.7
1,685,306	+				-0.0
1,685,306	+				+0.7
1,685,306	+				-0.4
1,685,306	+				-0.2
1,685,306	+				+0.7
1,685,306	+				+0.2
1,685,306	+				+0.7
1,685,307	-				-0.1
1,685,307	-				-0.2
1,685,348	+				-0.2
1,685,348	+				-0.3
1,685,348	+				+0.2
1,685,348	+				-0.1
1,685,348	+				-1.0
1,685,348	+				-0.2
1,685,348	+				-0.3
1,685,348	+				-1.4
1,685,349	-				-0.3
1,685,349	-				+0.9
1,685,349	-				-0.2
1,685,349	-				+0.0
1,685,349	-				-0.3
1,685,349	-				-1.0
1,685,349	-				+0.7
1,685,510	+				-0.6
1,685,768	+		GFF4732	0.25	-1.5
1,686,325	+		GFF4732	0.65	-0.0
1,686,325	+		GFF4732	0.65	+0.1
1,686,325	+		GFF4732	0.65	+0.5
1,686,325	+		GFF4732	0.65	-0.3
1,686,325	+		GFF4732	0.65	-0.2
1,686,325	+		GFF4732	0.65	+0.7
1,686,326	-		GFF4732	0.65	-1.5
1,686,326	-		GFF4732	0.65	+0.0
1,686,575	+		GFF4732	0.83	-0.2
1,686,575	+		GFF4732	0.83	-0.1
1,686,576	-		GFF4732	0.83	-0.6
1,686,576	-		GFF4732	0.83	-0.2
1,686,576	-		GFF4732	0.83	-0.8
1,686,576	-		GFF4732	0.83	+1.0
1,686,576	-		GFF4732	0.83	-0.3
1,686,657	+		GFF4732	0.89	-0.4
1,686,657	+		GFF4732	0.89	+0.1
1,686,657	+		GFF4732	0.89	-0.7
1,686,657	+		GFF4732	0.89	+0.5
1,686,657	+		GFF4732	0.89	-0.3
1,686,657	+		GFF4732	0.89	-0.0
1,686,658	-		GFF4732	0.89	-0.0
1,686,658	-		GFF4732	0.89	+1.1
1,686,690	+				+0.1
1,686,691	-				-0.5
1,686,709	-				+0.8
1,686,709	-				-0.9
1,686,709	-				-1.0
1,686,858	-				-0.1
1,686,858	-				+1.1
1,686,858	-				-1.2
1,686,858	-				+0.0
1,686,890	+				-0.4
1,686,891	-				-0.2
1,686,891	-				+0.3
1,686,898	+				+0.4
1,686,898	+				+0.5
1,686,899	-				-0.0
1,686,899	-				+0.3
1,687,087	+				-0.0
1,687,088	-				+0.2
1,687,088	-				-0.5
1,687,201	+				+0.7
1,687,201	+				-0.2
1,687,201	+				-0.7
1,687,201	+				-0.0
1,687,202	-				-0.3
1,687,202	-				+0.8
1,687,202	-				-0.5
1,687,202	-				-0.0
1,687,202	-				-0.1
1,687,202	-				-0.2
1,687,202	-				-0.9