Experiment: Ying_sugar7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4604 and GFF4605 are separated by 5 nucleotides GFF4605 and GFF4606 are separated by 25 nucleotides GFF4606 and GFF4607 are separated by 7 nucleotides GFF4607 and GFF4608 overlap by 4 nucleotides
GFF4604 - Probable glutathione s-transferase protein (EC 2.5.1.18), at 1,549,209 to 1,550,144
GFF4604
GFF4605 - ElaA protein, at 1,550,150 to 1,550,602
GFF4605
GFF4606 - Short-chain dehydrogenase/reductase SDR, at 1,550,628 to 1,551,533
GFF4606
GFF4607 - Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63), at 1,551,541 to 1,552,098
GFF4607
GFF4608 - L-rhamnose operon transcriptional activator RhaR, at 1,552,095 to 1,553,015
GFF4608
Position (kb) 1550
1551
1552 Strain fitness (log2 ratio) -1
0
1
2
3 at 1549.678 kb on - strand, within GFF4604 at 1549.678 kb on - strand, within GFF4604 at 1549.758 kb on + strand, within GFF4604 at 1550.118 kb on + strand at 1550.118 kb on + strand at 1550.119 kb on - strand at 1550.119 kb on - strand at 1550.119 kb on - strand at 1550.204 kb on + strand, within GFF4605 at 1550.204 kb on + strand, within GFF4605 at 1550.204 kb on + strand, within GFF4605 at 1550.205 kb on - strand, within GFF4605 at 1550.333 kb on + strand, within GFF4605 at 1550.520 kb on - strand, within GFF4605 at 1550.555 kb on + strand, within GFF4605 at 1550.556 kb on - strand, within GFF4605 at 1550.556 kb on - strand, within GFF4605 at 1551.111 kb on + strand, within GFF4606 at 1551.111 kb on + strand, within GFF4606 at 1551.111 kb on + strand, within GFF4606 at 1551.111 kb on + strand, within GFF4606 at 1551.112 kb on - strand, within GFF4606 at 1551.112 kb on - strand, within GFF4606 at 1551.112 kb on - strand, within GFF4606 at 1551.112 kb on - strand, within GFF4606 at 1551.156 kb on + strand, within GFF4606 at 1551.156 kb on + strand, within GFF4606 at 1551.210 kb on + strand, within GFF4606 at 1551.211 kb on - strand, within GFF4606 at 1551.394 kb on - strand, within GFF4606 at 1551.394 kb on - strand, within GFF4606 at 1551.394 kb on - strand, within GFF4606 at 1551.823 kb on + strand, within GFF4607 at 1551.823 kb on + strand, within GFF4607 at 1551.824 kb on - strand, within GFF4607 at 1551.824 kb on - strand, within GFF4607 at 1551.824 kb on - strand, within GFF4607 at 1552.143 kb on + strand at 1552.143 kb on + strand at 1552.144 kb on - strand at 1552.198 kb on - strand, within GFF4608 at 1552.198 kb on - strand, within GFF4608 at 1552.209 kb on + strand, within GFF4608 at 1552.209 kb on + strand, within GFF4608 at 1552.209 kb on + strand, within GFF4608 at 1552.209 kb on + strand, within GFF4608 at 1552.209 kb on + strand, within GFF4608 at 1552.209 kb on + strand, within GFF4608 at 1552.209 kb on + strand, within GFF4608 at 1552.209 kb on + strand, within GFF4608 at 1552.210 kb on - strand, within GFF4608 at 1552.210 kb on - strand, within GFF4608 at 1552.210 kb on - strand, within GFF4608 at 1552.210 kb on - strand, within GFF4608
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 1 remove 1,549,678 - GFF4604 0.50 +0.1 1,549,678 - GFF4604 0.50 -1.2 1,549,758 + GFF4604 0.59 -0.3 1,550,118 + -0.2 1,550,118 + +1.5 1,550,119 - -1.2 1,550,119 - +1.4 1,550,119 - -0.6 1,550,204 + GFF4605 0.12 +0.2 1,550,204 + GFF4605 0.12 -0.5 1,550,204 + GFF4605 0.12 -0.3 1,550,205 - GFF4605 0.12 -0.5 1,550,333 + GFF4605 0.40 -0.2 1,550,520 - GFF4605 0.82 +0.1 1,550,555 + GFF4605 0.89 +0.2 1,550,556 - GFF4605 0.90 +0.1 1,550,556 - GFF4605 0.90 -0.6 1,551,111 + GFF4606 0.53 +0.0 1,551,111 + GFF4606 0.53 -0.3 1,551,111 + GFF4606 0.53 +0.3 1,551,111 + GFF4606 0.53 +0.3 1,551,112 - GFF4606 0.53 +0.1 1,551,112 - GFF4606 0.53 +2.9 1,551,112 - GFF4606 0.53 +0.3 1,551,112 - GFF4606 0.53 +1.0 1,551,156 + GFF4606 0.58 -0.3 1,551,156 + GFF4606 0.58 +0.4 1,551,210 + GFF4606 0.64 +0.2 1,551,211 - GFF4606 0.64 +0.5 1,551,394 - GFF4606 0.85 -0.5 1,551,394 - GFF4606 0.85 -0.4 1,551,394 - GFF4606 0.85 -1.3 1,551,823 + GFF4607 0.51 +0.2 1,551,823 + GFF4607 0.51 -0.3 1,551,824 - GFF4607 0.51 -0.4 1,551,824 - GFF4607 0.51 -0.3 1,551,824 - GFF4607 0.51 -0.3 1,552,143 + +1.2 1,552,143 + -0.2 1,552,144 - -1.1 1,552,198 - GFF4608 0.11 -0.6 1,552,198 - GFF4608 0.11 -0.0 1,552,209 + GFF4608 0.12 +0.1 1,552,209 + GFF4608 0.12 -0.0 1,552,209 + GFF4608 0.12 +0.4 1,552,209 + GFF4608 0.12 +0.6 1,552,209 + GFF4608 0.12 +1.0 1,552,209 + GFF4608 0.12 +0.5 1,552,209 + GFF4608 0.12 -0.2 1,552,209 + GFF4608 0.12 +0.1 1,552,210 - GFF4608 0.12 +1.0 1,552,210 - GFF4608 0.12 +0.5 1,552,210 - GFF4608 0.12 -0.3 1,552,210 - GFF4608 0.12 -0.3
Or see this region's nucleotide sequence