Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4553

Experiment: Ying_sugar7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 1
1,484,047	+				-0.3
1,484,150	+				+0.3
1,484,150	+				+0.4
1,484,151	-				-0.1
1,485,163	+		GFF4553	0.10	-0.1
1,485,163	+		GFF4553	0.10	-1.4
1,485,163	+		GFF4553	0.10	-0.3
1,485,164	-		GFF4553	0.10	-2.8
1,485,164	-		GFF4553	0.10	-0.1
1,485,164	-		GFF4553	0.10	-0.8
1,485,190	+		GFF4553	0.13	-1.9
1,485,190	+		GFF4553	0.13	-0.3
1,485,190	+		GFF4553	0.13	-0.5
1,485,190	+		GFF4553	0.13	+0.2
1,485,190	+		GFF4553	0.13	-0.2
1,485,190	+		GFF4553	0.13	-0.7
1,485,191	-		GFF4553	0.13	-0.9
1,485,191	-		GFF4553	0.13	+0.1
1,485,191	-		GFF4553	0.13	-0.5
1,485,191	-		GFF4553	0.13	-0.2
1,485,191	-		GFF4553	0.13	-0.5
1,485,191	-		GFF4553	0.13	-1.5
1,485,191	-		GFF4553	0.13	-0.6
1,485,191	-		GFF4553	0.13	+0.6
1,485,191	-		GFF4553	0.13	+0.8
1,485,191	-		GFF4553	0.13	+0.1
1,485,191	-		GFF4553	0.13	-0.3
1,485,191	-		GFF4553	0.13	-0.1
1,485,191	-		GFF4553	0.13	+0.7
1,485,280	+		GFF4553	0.20	+0.5
1,485,281	-		GFF4553	0.20	+0.2
1,485,281	-		GFF4553	0.20	+1.5
1,485,281	-		GFF4553	0.20	-0.6
1,485,445	+		GFF4553	0.33	-0.1
1,485,446	-		GFF4553	0.33	-1.1
1,485,446	-		GFF4553	0.33	+0.5
1,485,446	-		GFF4553	0.33	-0.4
1,485,446	-		GFF4553	0.33	-0.4
1,485,454	+		GFF4553	0.34	-0.1
1,485,625	+		GFF4553	0.48	+0.5
1,485,625	+		GFF4553	0.48	-0.0
1,485,626	-		GFF4553	0.48	-0.7
1,485,626	-		GFF4553	0.48	-0.5
1,485,637	+		GFF4553	0.49	+0.1
1,485,637	+		GFF4553	0.49	-0.3
1,485,637	+		GFF4553	0.49	+0.1
1,485,637	+		GFF4553	0.49	-0.3
1,485,638	-		GFF4553	0.49	-0.8
1,485,638	-		GFF4553	0.49	-1.0
1,485,832	+		GFF4553	0.65	+0.1
1,485,832	+		GFF4553	0.65	+0.8
1,485,832	+		GFF4553	0.65	+0.1
1,485,832	+		GFF4553	0.65	+0.1
1,485,832	+		GFF4553	0.65	+1.3
1,485,833	-		GFF4553	0.65	+0.7
1,485,833	-		GFF4553	0.65	-0.1
1,485,833	-		GFF4553	0.65	-0.1
1,485,833	-		GFF4553	0.65	-0.5
1,485,833	-		GFF4553	0.65	+0.3
1,485,833	-		GFF4553	0.65	+0.1
1,485,834	-		GFF4553	0.65	-0.0
1,485,834	-		GFF4553	0.65	+0.1
1,485,835	+		GFF4553	0.65	-0.1
1,485,836	-		GFF4553	0.65	-0.3
1,485,836	-		GFF4553	0.65	-1.3
1,485,836	-		GFF4553	0.65	+1.1
1,485,836	-		GFF4553	0.65	-0.3
1,485,836	-		GFF4553	0.65	-0.3
1,485,836	-		GFF4553	0.65	-1.6
1,485,836	-		GFF4553	0.65	-0.0
1,485,871	+		GFF4553	0.68	+0.2
1,485,871	+		GFF4553	0.68	-0.3
1,485,871	+		GFF4553	0.68	+0.3
1,485,871	+		GFF4553	0.68	+0.8
1,485,871	+		GFF4553	0.68	-0.0
1,485,872	-		GFF4553	0.68	-0.2
1,485,872	-		GFF4553	0.68	-0.4
1,485,872	-		GFF4553	0.68	-0.3
1,485,872	-		GFF4553	0.68	-0.1
1,485,872	-		GFF4553	0.68	-0.0
1,486,012	+		GFF4553	0.80	+1.0
1,486,013	-		GFF4553	0.80	-0.4
1,486,075	+		GFF4553	0.85	-0.3
1,486,075	+		GFF4553	0.85	+1.0
1,486,075	+		GFF4553	0.85	+0.9
1,486,324	+				+0.0
1,486,325	-				-0.5
1,486,381	+				+0.1