Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4376

Experiment: Ying_sugar7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 1
1,305,058	+		GFF4374	0.76	+0.6
1,305,058	+		GFF4374	0.76	+1.2
1,305,059	-		GFF4374	0.76	-0.8
1,305,059	-		GFF4374	0.76	-0.3
1,305,180	-				+0.9
1,305,220	+				-0.0
1,305,221	-				-0.0
1,305,221	-				-1.0
1,305,448	-		GFF4375	0.23	+0.1
1,305,448	-		GFF4375	0.23	-0.0
1,305,564	+		GFF4375	0.38	+0.5
1,305,564	+		GFF4375	0.38	+1.4
1,305,627	-		GFF4375	0.47	+0.3
1,305,742	-		GFF4375	0.61	+0.1
1,305,837	+		GFF4375	0.74	+0.4
1,305,837	+		GFF4375	0.74	+0.3
1,305,838	-		GFF4375	0.74	+0.2
1,306,023	+				-0.2
1,306,082	+				-0.1
1,306,082	+				+0.3
1,306,454	+		GFF4376	0.37	+0.2
1,306,454	+		GFF4376	0.37	-0.0
1,306,529	-		GFF4376	0.44	+0.0
1,306,779	+		GFF4376	0.66	-1.0
1,306,780	-		GFF4376	0.66	+0.2
1,306,944	+		GFF4376	0.81	-0.9
1,306,944	+		GFF4376	0.81	-0.2
1,306,945	-		GFF4376	0.81	+0.6
1,306,945	-		GFF4376	0.81	-0.4
1,306,945	-		GFF4376	0.81	+0.2
1,306,980	+		GFF4376	0.84	+0.6
1,306,981	-		GFF4376	0.84	-0.2
1,307,066	+				-1.6
1,307,067	-				+0.2
1,307,067	-				-0.0
1,307,087	-				+0.0
1,307,087	-				+0.1
1,307,137	-				+0.6
1,307,155	+				+0.2
1,307,156	-				-0.1
1,307,156	-				+0.1
1,307,156	-				+0.6
1,307,362	-		GFF4377	0.19	+0.8
1,307,382	+		GFF4377	0.21	-0.4
1,307,383	-		GFF4377	0.21	+2.0
1,307,391	-		GFF4377	0.22	+0.6
1,307,483	+		GFF4377	0.31	-1.0
1,307,484	-		GFF4377	0.31	-1.4
1,307,516	+		GFF4377	0.34	-0.1
1,307,516	+		GFF4377	0.34	+0.2
1,307,516	+		GFF4377	0.34	+0.0
1,307,516	+		GFF4377	0.34	+0.6
1,307,517	-		GFF4377	0.34	-0.3
1,307,517	-		GFF4377	0.34	-0.1
1,307,518	+		GFF4377	0.34	+0.1
1,307,519	-		GFF4377	0.34	+0.4
1,307,519	-		GFF4377	0.34	-0.6
1,307,628	+		GFF4377	0.45	-0.4
1,307,628	+		GFF4377	0.45	+0.1
1,307,628	+		GFF4377	0.45	-0.1
1,307,629	-		GFF4377	0.45	+0.3
1,307,629	-		GFF4377	0.45	-0.0
1,307,629	-		GFF4377	0.45	-0.1
1,307,629	-		GFF4377	0.45	+0.4
1,307,652	+		GFF4377	0.47	+0.9
1,307,653	-		GFF4377	0.47	-0.3
1,307,670	+		GFF4377	0.49	+0.4
1,307,670	+		GFF4377	0.49	+0.1
1,307,671	-		GFF4377	0.49	-0.2
1,307,671	-		GFF4377	0.49	+1.8
1,307,704	+		GFF4377	0.52	+0.4
1,307,811	+		GFF4377	0.62	-0.2
1,307,812	-		GFF4377	0.62	-0.2
1,307,835	-		GFF4377	0.64	+0.3
1,307,835	-		GFF4377	0.64	-0.1
1,307,851	+		GFF4377	0.66	-0.6
1,307,851	+		GFF4377	0.66	-0.2
1,307,852	-		GFF4377	0.66	-0.3
1,307,903	-		GFF4377	0.71	+0.9
1,307,950	+		GFF4377	0.76	-0.5
1,307,992	+		GFF4377	0.80	-0.0
1,307,992	+		GFF4377	0.80	-0.0
1,307,992	+		GFF4377	0.80	-1.9
1,307,993	-		GFF4377	0.80	-0.1
1,307,993	-		GFF4377	0.80	-0.2
1,308,038	-		GFF4377	0.84	+0.0