Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4290

Experiment: Ying_sugar7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 1
1,215,165	-		GFF4289	0.51	-0.7
1,215,500	+		GFF4289	0.77	-0.8
1,215,501	-		GFF4289	0.77	-0.8
1,215,501	-		GFF4289	0.77	-2.3
1,215,501	-		GFF4289	0.77	-0.9
1,215,501	-		GFF4289	0.77	-2.0
1,215,501	-		GFF4289	0.77	-1.0
1,215,501	-		GFF4289	0.77	-1.6
1,215,501	-		GFF4289	0.77	-1.8
1,215,557	+		GFF4289	0.81	-1.5
1,215,557	+		GFF4289	0.81	-1.8
1,215,557	+		GFF4289	0.81	-2.4
1,215,557	+		GFF4289	0.81	-1.4
1,215,563	+		GFF4289	0.82	-1.0
1,215,801	+				-1.5
1,215,802	-				+0.6
1,215,802	-				-1.2
1,215,845	-				-0.3
1,215,853	+				-0.8
1,215,853	+				-2.3
1,215,854	-				-1.0
1,215,854	-				-1.3
1,215,854	-				-1.1
1,215,854	-				-1.9
1,215,854	-				-0.5
1,215,854	-				-1.2
1,215,854	-				-1.4
1,216,126	+		GFF4290	0.29	-0.7
1,216,127	-		GFF4290	0.29	-1.5
1,216,129	+		GFF4290	0.29	-1.6
1,216,130	-		GFF4290	0.30	-2.7
1,216,165	+		GFF4290	0.33	-2.0
1,216,165	+		GFF4290	0.33	-1.2
1,216,165	+		GFF4290	0.33	-1.3
1,216,165	+		GFF4290	0.33	-1.7
1,216,165	+		GFF4290	0.33	-1.5
1,216,166	-		GFF4290	0.33	-2.3
1,216,166	-		GFF4290	0.33	-1.0
1,216,166	-		GFF4290	0.33	-1.0
1,216,166	-		GFF4290	0.33	-1.9
1,216,166	-		GFF4290	0.33	-1.4
1,216,166	-		GFF4290	0.33	-2.2
1,216,829	+				-0.2
1,216,829	+				-0.3
1,216,830	-				+0.4
1,216,830	-				-1.3
1,216,990	-		GFF4291	0.25	-1.4
1,217,220	+		GFF4291	0.56	-1.8
1,217,220	+		GFF4291	0.56	-1.8
1,217,220	+		GFF4291	0.56	-2.1
1,217,220	+		GFF4291	0.56	-1.2
1,217,220	+		GFF4291	0.56	-1.7
1,217,221	-		GFF4291	0.56	-1.5
1,217,221	-		GFF4291	0.56	-1.4
1,217,532	+				-1.9
1,217,532	+				-1.8
1,217,532	+				-2.0
1,217,533	-				-0.9
1,217,533	-				-1.4
1,217,618	+		GFF4292	0.12	-2.1
1,217,630	+		GFF4292	0.16	-2.5
1,217,630	+		GFF4292	0.16	-0.4