Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4182

Experiment: Ying_sugar7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 1
1,097,353	+		GFF4180	0.39	+0.6
1,097,404	+		GFF4180	0.46	+0.5
1,097,405	-		GFF4180	0.46	+2.1
1,097,405	-		GFF4180	0.46	+0.5
1,097,405	-		GFF4180	0.46	+1.9
1,097,759	-				-0.8
1,097,783	-				-0.6
1,097,783	-				+0.0
1,098,036	+		GFF4181	0.68	+0.4
1,098,037	-		GFF4181	0.68	+0.0
1,098,192	-				+0.3
1,098,281	+		GFF4182	0.10	+1.6
1,098,281	+		GFF4182	0.10	-0.4
1,098,281	+		GFF4182	0.10	-1.0
1,098,282	-		GFF4182	0.10	-0.2
1,098,282	-		GFF4182	0.10	-1.0
1,098,350	+		GFF4182	0.15	-0.2
1,098,350	+		GFF4182	0.15	+0.3
1,098,350	+		GFF4182	0.15	+0.9
1,098,351	-		GFF4182	0.15	-0.3
1,098,351	-		GFF4182	0.15	-0.4
1,098,369	-		GFF4182	0.16	+0.1
1,098,369	-		GFF4182	0.16	-0.6
1,098,642	+		GFF4182	0.36	-0.0
1,098,643	-		GFF4182	0.36	-0.1
1,098,643	-		GFF4182	0.36	-0.1
1,099,033	-		GFF4182	0.65	-1.3
1,099,381	+		GFF4182	0.90	+0.2
1,099,382	-				+1.2
1,099,517	+				-0.7
1,099,518	-				-0.5
1,099,559	+				+0.0
1,099,560	-				+0.7
1,099,560	-				+0.1
1,099,589	+				-0.2
1,099,608	+		GFF4183	0.11	+0.1
1,099,609	-		GFF4183	0.11	+0.4
1,099,622	-		GFF4183	0.13	+0.6
1,099,742	+		GFF4183	0.30	-0.0
1,099,743	-		GFF4183	0.30	-0.2
1,099,911	-		GFF4183	0.54	+0.3
1,099,911	-		GFF4183	0.54	-0.1
1,099,916	+		GFF4183	0.54	-0.4
1,099,917	-		GFF4183	0.55	-0.2
1,099,918	+		GFF4183	0.55	+0.2
1,099,918	+		GFF4183	0.55	+1.4
1,099,919	-		GFF4183	0.55	-0.2
1,099,952	+		GFF4183	0.60	-0.3
1,100,070	-		GFF4183	0.76	+0.2
1,100,094	+		GFF4183	0.80	-0.3
1,100,177	+				-0.5
1,100,177	+				-0.3
1,100,177	+				+0.5
1,100,177	+				-0.7
1,100,178	-				+0.9
1,100,250	+				+0.7
1,100,251	-				-0.5
1,100,251	-				-0.5
1,100,254	+				-0.0
1,100,254	+				+0.4
1,100,255	-				+0.3
1,100,255	-				+0.2
1,100,255	-				+0.6