Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4162

Experiment: Ying_sugar7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 1
1,076,634	-		GFF4160	0.30	+0.1
1,076,634	-		GFF4160	0.30	+0.3
1,076,634	-		GFF4160	0.30	-0.2
1,076,644	+		GFF4160	0.31	+0.9
1,076,809	+		GFF4160	0.52	+2.1
1,076,809	+		GFF4160	0.52	+0.1
1,076,810	-		GFF4160	0.52	-0.2
1,076,810	-		GFF4160	0.52	-1.0
1,076,810	-		GFF4160	0.52	-0.3
1,076,810	-		GFF4160	0.52	-0.2
1,076,810	-		GFF4160	0.52	-0.1
1,076,810	-		GFF4160	0.52	+0.6
1,076,815	+		GFF4160	0.53	+0.0
1,076,815	+		GFF4160	0.53	+0.7
1,077,052	+		GFF4160	0.82	-0.5
1,077,224	+				-0.3
1,077,225	-				-1.4
1,077,225	-				-0.9
1,077,260	+				+0.7
1,077,260	+				-0.4
1,077,260	+				-0.3
1,077,260	+				-0.4
1,077,260	+				-1.0
1,077,260	+				-0.0
1,077,260	+				-0.1
1,077,260	+				+0.3
1,077,260	+				-1.2
1,077,261	-				-0.5
1,077,261	-				-0.8
1,077,261	-				+0.2
1,077,332	-		GFF4161	0.22	-0.4
1,077,358	+		GFF4161	0.32	+0.4
1,077,359	-		GFF4161	0.32	+0.4
1,077,359	-		GFF4161	0.32	-0.7
1,077,445	+		GFF4161	0.62	+1.7
1,077,445	+		GFF4161	0.62	-0.1
1,077,445	+		GFF4161	0.62	-1.6
1,077,445	+		GFF4161	0.62	-0.2
1,077,445	+		GFF4161	0.62	+0.6
1,077,445	+		GFF4161	0.62	-0.3
1,077,445	+		GFF4161	0.62	+0.2
1,077,446	-		GFF4161	0.62	-0.8
1,077,446	-		GFF4161	0.62	-1.0
1,077,446	-		GFF4161	0.62	-0.4
1,077,487	+		GFF4161	0.77	+0.4
1,077,511	+		GFF4161	0.85	+0.2
1,077,511	+		GFF4161	0.85	-0.3
1,077,535	+				+0.9
1,077,535	+				+0.6
1,077,536	-				-0.3
1,077,805	+		GFF4162	0.27	+1.0
1,077,806	-		GFF4162	0.27	-0.3
1,077,887	-		GFF4162	0.37	+0.9
1,077,900	+		GFF4162	0.38	-0.5
1,077,945	+		GFF4162	0.43	-0.5
1,077,946	-		GFF4162	0.44	+0.1
1,077,946	-		GFF4162	0.44	-0.4
1,078,119	+		GFF4162	0.63	+0.1
1,078,119	+		GFF4162	0.63	+0.1
1,078,119	+		GFF4162	0.63	-0.8
1,078,203	+		GFF4162	0.73	-0.3
1,078,203	+		GFF4162	0.73	+0.1
1,078,204	-		GFF4162	0.73	+0.2
1,078,312	-		GFF4162	0.86	+0.2
1,078,468	-				+0.2
1,078,501	-				+1.2
1,078,501	-				-0.3
1,078,501	-				-0.1
1,078,507	-				+1.9
1,078,515	-				-1.0
1,078,571	-				+0.3
1,078,575	+				-0.2
1,078,576	-				-0.1
1,078,579	+				+0.4
1,078,579	+				-0.8
1,078,580	-				-0.2
1,078,580	-				-0.1
1,078,580	-				+0.4
1,078,584	-				+1.1
1,078,594	-				+0.3
1,079,017	+		GFF4163	0.57	-0.2