Experiment: Ying_sugar7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4015 and GFF4016 are separated by 24 nucleotides GFF4016 and GFF4017 overlap by 46 nucleotides GFF4017 and GFF4018 overlap by 1 nucleotides GFF4018 and GFF4019 are separated by 60 nucleotides GFF4019 and GFF4020 are separated by 34 nucleotides
GFF4015 - hypothetical protein, at 931,500 to 932,348
GFF4015
GFF4016 - PvdO, pyoverdine responsive serine/threonine kinase (predicted by OlgaV), at 932,373 to 933,356
GFF4016
GFF4017 - Methionine aminopeptidase (EC 3.4.11.18), at 933,311 to 934,123
GFF4017
GFF4018 - FIG01219929: hypothetical protein, at 934,123 to 934,353
GFF4018
GFF4019 - FIG006231: RNA-binding protein, at 934,414 to 934,887
GFF4019
GFF4020 - Huntingtin interacting protein E-like protein, at 934,922 to 936,148
GFF4020
Position (kb) 933
934
935 Strain fitness (log2 ratio) -1
0
1 at 932.328 kb on + strand at 932.329 kb on - strand at 932.715 kb on + strand, within GFF4016 at 932.715 kb on + strand, within GFF4016 at 932.716 kb on - strand, within GFF4016 at 932.716 kb on - strand, within GFF4016 at 932.727 kb on + strand, within GFF4016 at 932.781 kb on + strand, within GFF4016 at 932.781 kb on + strand, within GFF4016 at 932.895 kb on + strand, within GFF4016 at 932.896 kb on - strand, within GFF4016 at 932.925 kb on + strand, within GFF4016 at 932.925 kb on + strand, within GFF4016 at 932.926 kb on - strand, within GFF4016 at 932.926 kb on - strand, within GFF4016 at 933.096 kb on + strand, within GFF4016 at 933.097 kb on - strand, within GFF4016 at 933.174 kb on + strand, within GFF4016 at 933.174 kb on + strand, within GFF4016 at 933.174 kb on + strand, within GFF4016 at 933.174 kb on + strand, within GFF4016 at 933.175 kb on - strand, within GFF4016 at 933.175 kb on - strand, within GFF4016 at 933.175 kb on - strand, within GFF4016 at 933.178 kb on - strand, within GFF4016 at 933.268 kb on - strand at 933.615 kb on + strand, within GFF4017 at 933.729 kb on + strand, within GFF4017 at 933.730 kb on - strand, within GFF4017 at 933.730 kb on - strand, within GFF4017 at 933.780 kb on + strand, within GFF4017 at 933.780 kb on + strand, within GFF4017 at 933.780 kb on + strand, within GFF4017 at 933.780 kb on + strand, within GFF4017 at 933.780 kb on + strand, within GFF4017 at 933.781 kb on - strand, within GFF4017 at 933.781 kb on - strand, within GFF4017 at 933.781 kb on - strand, within GFF4017 at 933.781 kb on - strand, within GFF4017 at 933.933 kb on + strand, within GFF4017 at 934.124 kb on + strand at 934.124 kb on + strand at 934.125 kb on - strand at 934.347 kb on + strand at 934.415 kb on + strand at 934.415 kb on + strand at 934.415 kb on + strand at 934.416 kb on - strand at 934.416 kb on - strand at 934.784 kb on + strand, within GFF4019 at 934.785 kb on - strand, within GFF4019 at 934.785 kb on - strand, within GFF4019 at 934.877 kb on + strand at 934.878 kb on - strand at 934.962 kb on + strand at 934.962 kb on + strand at 934.962 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 1 remove 932,328 + -0.2 932,329 - -0.5 932,715 + GFF4016 0.35 +0.1 932,715 + GFF4016 0.35 -0.5 932,716 - GFF4016 0.35 +0.2 932,716 - GFF4016 0.35 -0.5 932,727 + GFF4016 0.36 +0.5 932,781 + GFF4016 0.41 +0.2 932,781 + GFF4016 0.41 +0.1 932,895 + GFF4016 0.53 +0.5 932,896 - GFF4016 0.53 +0.3 932,925 + GFF4016 0.56 -0.6 932,925 + GFF4016 0.56 -0.0 932,926 - GFF4016 0.56 +1.2 932,926 - GFF4016 0.56 -0.5 933,096 + GFF4016 0.73 -0.5 933,097 - GFF4016 0.74 -0.3 933,174 + GFF4016 0.81 -0.5 933,174 + GFF4016 0.81 -0.2 933,174 + GFF4016 0.81 +0.1 933,174 + GFF4016 0.81 -0.5 933,175 - GFF4016 0.82 -0.6 933,175 - GFF4016 0.82 -0.0 933,175 - GFF4016 0.82 -0.0 933,178 - GFF4016 0.82 -0.8 933,268 - -0.2 933,615 + GFF4017 0.37 -0.3 933,729 + GFF4017 0.51 -0.7 933,730 - GFF4017 0.52 -0.3 933,730 - GFF4017 0.52 -0.3 933,780 + GFF4017 0.58 +0.1 933,780 + GFF4017 0.58 +0.5 933,780 + GFF4017 0.58 -0.5 933,780 + GFF4017 0.58 +0.5 933,780 + GFF4017 0.58 +0.5 933,781 - GFF4017 0.58 +0.6 933,781 - GFF4017 0.58 -0.4 933,781 - GFF4017 0.58 -0.1 933,781 - GFF4017 0.58 -0.8 933,933 + GFF4017 0.77 -0.6 934,124 + -1.5 934,124 + -0.5 934,125 - -0.5 934,347 + -0.0 934,415 + +1.1 934,415 + -0.3 934,415 + +0.4 934,416 - -0.1 934,416 - +0.8 934,784 + GFF4019 0.78 -0.5 934,785 - GFF4019 0.78 -0.1 934,785 - GFF4019 0.78 +0.1 934,877 + +0.3 934,878 - -0.3 934,962 + +0.8 934,962 + -0.4 934,962 + +1.3
Or see this region's nucleotide sequence