Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3358

Experiment: Ying_sugar7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 1
240,712	-		GFF3356	0.84	-0.8
240,712	-		GFF3356	0.84	-1.0
240,712	-		GFF3356	0.84	-1.9
240,869	+				+0.9
240,869	+				+0.3
240,869	+				+0.5
240,869	+				+0.7
240,869	+				-0.9
240,887	+				+1.4
241,058	+		GFF3357	0.32	-0.9
241,059	-		GFF3357	0.32	+0.4
241,059	-		GFF3357	0.32	+0.1
241,059	-		GFF3357	0.32	+0.9
241,265	+		GFF3357	0.59	-0.1
241,266	-		GFF3357	0.59	+0.1
241,266	-		GFF3357	0.59	-0.0
241,266	-		GFF3357	0.59	+0.6
241,266	-		GFF3357	0.59	+1.6
241,559	+				-0.5
241,574	+				-0.3
241,574	+				+1.2
241,575	-				-0.3
241,575	-				+0.9
242,396	-		GFF3358	0.28	-0.0
242,477	-		GFF3358	0.31	-1.5
242,477	-		GFF3358	0.31	+0.1
242,528	-		GFF3358	0.33	+0.2
242,528	-		GFF3358	0.33	-1.5
242,630	-		GFF3358	0.36	-1.2
242,630	-		GFF3358	0.36	-0.6
244,061	-		GFF3358	0.90	-1.5
244,061	-		GFF3358	0.90	-0.3
244,061	-		GFF3358	0.90	+0.7
244,350	+				-0.1
244,350	+				-1.5
244,350	+				+0.3
244,350	+				-0.3
244,351	-				-0.7
244,429	+				+1.0
244,451	-				-0.5
244,465	-				+0.7
244,465	-				+1.4
244,465	-				-0.1
244,465	-				-0.1