Experiment: Ying_sugar7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3258 and GFF3259 are separated by 227 nucleotides GFF3259 and GFF3260 are separated by 162 nucleotides GFF3260 and GFF3261 are separated by 3 nucleotides
GFF3258 - DNA-binding heavy metal response regulator, at 140,503 to 141,186
GFF3258
GFF3259 - hypothetical protein, at 141,414 to 141,872
GFF3259
GFF3260 - hypothetical protein, at 142,035 to 143,360
GFF3260
GFF3261 - hypothetical protein, at 143,364 to 144,542
GFF3261
Position (kb) 142
143
144 Strain fitness (log2 ratio) -2
-1
0
1 at 141.053 kb on + strand, within GFF3258 at 141.074 kb on + strand, within GFF3258 at 141.143 kb on + strand at 141.144 kb on - strand at 141.279 kb on + strand at 141.279 kb on + strand at 141.279 kb on + strand at 141.280 kb on - strand at 141.280 kb on - strand at 141.280 kb on - strand at 141.280 kb on - strand at 141.325 kb on + strand at 141.326 kb on - strand at 141.326 kb on - strand at 141.326 kb on - strand at 141.326 kb on - strand at 141.570 kb on + strand, within GFF3259 at 141.571 kb on - strand, within GFF3259 at 141.571 kb on - strand, within GFF3259 at 141.571 kb on - strand, within GFF3259 at 142.198 kb on + strand, within GFF3260 at 142.198 kb on + strand, within GFF3260 at 142.199 kb on - strand, within GFF3260 at 142.199 kb on - strand, within GFF3260 at 142.199 kb on - strand, within GFF3260 at 142.279 kb on + strand, within GFF3260 at 142.279 kb on + strand, within GFF3260 at 142.279 kb on + strand, within GFF3260 at 142.280 kb on - strand, within GFF3260 at 142.455 kb on + strand, within GFF3260 at 142.495 kb on + strand, within GFF3260 at 142.567 kb on + strand, within GFF3260 at 142.567 kb on + strand, within GFF3260 at 142.568 kb on - strand, within GFF3260 at 142.579 kb on + strand, within GFF3260 at 142.580 kb on - strand, within GFF3260 at 142.653 kb on + strand, within GFF3260 at 142.744 kb on + strand, within GFF3260 at 142.745 kb on - strand, within GFF3260 at 142.745 kb on - strand, within GFF3260 at 142.801 kb on + strand, within GFF3260 at 142.906 kb on + strand, within GFF3260 at 143.398 kb on + strand at 143.398 kb on + strand at 143.399 kb on - strand at 143.542 kb on + strand, within GFF3261 at 143.651 kb on - strand, within GFF3261 at 143.662 kb on + strand, within GFF3261 at 143.662 kb on + strand, within GFF3261 at 143.875 kb on + strand, within GFF3261 at 143.875 kb on + strand, within GFF3261 at 143.875 kb on + strand, within GFF3261 at 143.875 kb on + strand, within GFF3261 at 143.875 kb on + strand, within GFF3261 at 143.875 kb on + strand, within GFF3261 at 143.876 kb on - strand, within GFF3261 at 143.876 kb on - strand, within GFF3261 at 143.876 kb on - strand, within GFF3261 at 143.876 kb on - strand, within GFF3261 at 143.878 kb on + strand, within GFF3261 at 144.214 kb on + strand, within GFF3261 at 144.214 kb on + strand, within GFF3261 at 144.214 kb on + strand, within GFF3261 at 144.215 kb on - strand, within GFF3261 at 144.215 kb on - strand, within GFF3261 at 144.215 kb on - strand, within GFF3261 at 144.215 kb on - strand, within GFF3261 at 144.241 kb on + strand, within GFF3261 at 144.241 kb on + strand, within GFF3261 at 144.271 kb on + strand, within GFF3261 at 144.271 kb on + strand, within GFF3261 at 144.271 kb on + strand, within GFF3261 at 144.351 kb on + strand, within GFF3261 at 144.352 kb on - strand, within GFF3261
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 1 remove 141,053 + GFF3258 0.80 +0.3 141,074 + GFF3258 0.83 +0.1 141,143 + -1.2 141,144 - +0.1 141,279 + +0.6 141,279 + -1.3 141,279 + +0.2 141,280 - -0.0 141,280 - +0.3 141,280 - +0.5 141,280 - +1.0 141,325 + +0.8 141,326 - +0.2 141,326 - -0.8 141,326 - +0.1 141,326 - +0.4 141,570 + GFF3259 0.34 +0.2 141,571 - GFF3259 0.34 +1.0 141,571 - GFF3259 0.34 +1.2 141,571 - GFF3259 0.34 -0.2 142,198 + GFF3260 0.12 +0.3 142,198 + GFF3260 0.12 -0.6 142,199 - GFF3260 0.12 -0.5 142,199 - GFF3260 0.12 -0.5 142,199 - GFF3260 0.12 -0.4 142,279 + GFF3260 0.18 -0.2 142,279 + GFF3260 0.18 -0.0 142,279 + GFF3260 0.18 +0.5 142,280 - GFF3260 0.18 -0.2 142,455 + GFF3260 0.32 -0.1 142,495 + GFF3260 0.35 -0.2 142,567 + GFF3260 0.40 -0.3 142,567 + GFF3260 0.40 +0.7 142,568 - GFF3260 0.40 +0.7 142,579 + GFF3260 0.41 -1.3 142,580 - GFF3260 0.41 +0.2 142,653 + GFF3260 0.47 -0.0 142,744 + GFF3260 0.53 -0.8 142,745 - GFF3260 0.54 +0.1 142,745 - GFF3260 0.54 -0.9 142,801 + GFF3260 0.58 -0.2 142,906 + GFF3260 0.66 -0.1 143,398 + -0.7 143,398 + +0.5 143,399 - -0.2 143,542 + GFF3261 0.15 +0.6 143,651 - GFF3261 0.24 -0.6 143,662 + GFF3261 0.25 -0.4 143,662 + GFF3261 0.25 -1.1 143,875 + GFF3261 0.43 -0.0 143,875 + GFF3261 0.43 -0.9 143,875 + GFF3261 0.43 -0.2 143,875 + GFF3261 0.43 -0.9 143,875 + GFF3261 0.43 +0.4 143,875 + GFF3261 0.43 +0.2 143,876 - GFF3261 0.43 -0.8 143,876 - GFF3261 0.43 +0.5 143,876 - GFF3261 0.43 +0.2 143,876 - GFF3261 0.43 -0.1 143,878 + GFF3261 0.44 +0.2 144,214 + GFF3261 0.72 -0.1 144,214 + GFF3261 0.72 -0.3 144,214 + GFF3261 0.72 +0.0 144,215 - GFF3261 0.72 +0.4 144,215 - GFF3261 0.72 -1.9 144,215 - GFF3261 0.72 +0.0 144,215 - GFF3261 0.72 -0.3 144,241 + GFF3261 0.74 -1.7 144,241 + GFF3261 0.74 -0.9 144,271 + GFF3261 0.77 -0.1 144,271 + GFF3261 0.77 -0.0 144,271 + GFF3261 0.77 +0.9 144,351 + GFF3261 0.84 -0.3 144,352 - GFF3261 0.84 +0.1
Or see this region's nucleotide sequence