Experiment: Ying_sugar7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2959 and GFF2960 are separated by 3 nucleotides GFF2960 and GFF2961 are separated by 95 nucleotides
GFF2959 - TRAP-type C4-dicarboxylate transport system, large permease component, at 37,692 to 38,993
GFF2959
GFF2960 - Gluconolactonase, at 38,997 to 39,923
GFF2960
GFF2961 - putative exported protein, at 40,019 to 40,996
GFF2961
Position (kb) 38
39
40 Strain fitness (log2 ratio) -1
0
1 at 38.179 kb on - strand, within GFF2959 at 38.265 kb on + strand, within GFF2959 at 38.265 kb on + strand, within GFF2959 at 38.265 kb on + strand, within GFF2959 at 38.265 kb on + strand, within GFF2959 at 38.265 kb on + strand, within GFF2959 at 38.266 kb on - strand, within GFF2959 at 38.266 kb on - strand, within GFF2959 at 38.403 kb on + strand, within GFF2959 at 38.404 kb on - strand, within GFF2959 at 38.556 kb on + strand, within GFF2959 at 38.556 kb on + strand, within GFF2959 at 38.556 kb on + strand, within GFF2959 at 38.557 kb on - strand, within GFF2959 at 38.557 kb on - strand, within GFF2959 at 39.232 kb on - strand, within GFF2960 at 39.414 kb on + strand, within GFF2960 at 39.415 kb on - strand, within GFF2960 at 39.559 kb on - strand, within GFF2960 at 39.636 kb on + strand, within GFF2960 at 39.636 kb on + strand, within GFF2960 at 39.636 kb on + strand, within GFF2960 at 39.636 kb on + strand, within GFF2960 at 39.636 kb on + strand, within GFF2960 at 39.636 kb on + strand, within GFF2960 at 39.636 kb on + strand, within GFF2960 at 39.637 kb on - strand, within GFF2960 at 39.760 kb on - strand, within GFF2960 at 39.807 kb on + strand, within GFF2960 at 39.808 kb on - strand, within GFF2960 at 39.834 kb on + strand at 39.834 kb on + strand at 39.834 kb on + strand at 39.834 kb on + strand at 39.900 kb on + strand at 39.900 kb on + strand at 39.901 kb on - strand at 39.901 kb on - strand at 39.901 kb on - strand at 39.901 kb on - strand at 39.917 kb on + strand at 39.917 kb on + strand at 39.917 kb on + strand at 39.917 kb on + strand at 39.918 kb on - strand at 39.918 kb on - strand at 39.918 kb on - strand at 40.145 kb on + strand, within GFF2961 at 40.181 kb on + strand, within GFF2961 at 40.181 kb on + strand, within GFF2961
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 1 remove 38,179 - GFF2959 0.37 +0.9 38,265 + GFF2959 0.44 -0.9 38,265 + GFF2959 0.44 -1.0 38,265 + GFF2959 0.44 +0.0 38,265 + GFF2959 0.44 -0.4 38,265 + GFF2959 0.44 -1.3 38,266 - GFF2959 0.44 +0.5 38,266 - GFF2959 0.44 +0.3 38,403 + GFF2959 0.55 +1.0 38,404 - GFF2959 0.55 -0.2 38,556 + GFF2959 0.66 -0.4 38,556 + GFF2959 0.66 +0.4 38,556 + GFF2959 0.66 +0.5 38,557 - GFF2959 0.66 +1.1 38,557 - GFF2959 0.66 -0.2 39,232 - GFF2960 0.25 -0.1 39,414 + GFF2960 0.45 -1.4 39,415 - GFF2960 0.45 -0.9 39,559 - GFF2960 0.61 +0.5 39,636 + GFF2960 0.69 +0.7 39,636 + GFF2960 0.69 +0.6 39,636 + GFF2960 0.69 -1.2 39,636 + GFF2960 0.69 +1.1 39,636 + GFF2960 0.69 +1.3 39,636 + GFF2960 0.69 +0.1 39,636 + GFF2960 0.69 +1.0 39,637 - GFF2960 0.69 -0.3 39,760 - GFF2960 0.82 -0.3 39,807 + GFF2960 0.87 -0.2 39,808 - GFF2960 0.87 -0.2 39,834 + -0.1 39,834 + -0.8 39,834 + -0.0 39,834 + -0.3 39,900 + -0.0 39,900 + -0.2 39,901 - +0.3 39,901 - -1.4 39,901 - +0.3 39,901 - +1.7 39,917 + -0.2 39,917 + -1.1 39,917 + -1.0 39,917 + +0.0 39,918 - +1.0 39,918 - +1.1 39,918 - -0.0 40,145 + GFF2961 0.13 -0.0 40,181 + GFF2961 0.17 -0.3 40,181 + GFF2961 0.17 -0.5
Or see this region's nucleotide sequence