Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF252

Experiment: Ying_sugar7 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF251 and GFF252 are separated by 65 nucleotidesGFF252 and GFF253 are separated by 12 nucleotidesGFF253 and GFF254 are separated by 293 nucleotidesGFF254 and GFF255 are separated by 24 nucleotides GFF251 - hypothetical protein, at 267,917 to 268,714 GFF251 GFF252 - Sulfide dehydrogenase [flavocytochrome C] flavoprotein chain precursor (EC 1.8.2.-), at 268,780 to 270,057 GFF252 GFF253 - cytochrome c subunit of flavocytochrome c sulfide dehydrogenase, at 270,070 to 270,372 GFF253 GFF254 - hypothetical protein, at 270,666 to 270,878 GFF254 GFF255 - MFS permease, at 270,903 to 272,153 GFF255 Position (kb) 268 269 270 271Strain fitness (log2 ratio) -2 -1 0 1 2at 267.810 kb on + strandat 267.811 kb on - strandat 267.811 kb on - strandat 267.811 kb on - strandat 267.909 kb on + strandat 267.910 kb on - strandat 267.911 kb on + strandat 268.041 kb on + strand, within GFF251at 268.041 kb on + strand, within GFF251at 268.041 kb on + strand, within GFF251at 268.041 kb on + strand, within GFF251at 268.041 kb on + strand, within GFF251at 268.041 kb on + strand, within GFF251at 268.042 kb on - strand, within GFF251at 268.042 kb on - strand, within GFF251at 268.042 kb on - strand, within GFF251at 268.042 kb on - strand, within GFF251at 268.162 kb on - strand, within GFF251at 268.317 kb on + strand, within GFF251at 268.317 kb on + strand, within GFF251at 268.318 kb on - strand, within GFF251at 268.318 kb on - strand, within GFF251at 268.318 kb on - strand, within GFF251at 268.318 kb on - strand, within GFF251at 268.509 kb on + strand, within GFF251at 268.587 kb on + strand, within GFF251at 268.588 kb on - strand, within GFF251at 268.588 kb on - strand, within GFF251at 268.827 kb on - strandat 268.827 kb on - strandat 268.908 kb on - strand, within GFF252at 268.908 kb on - strand, within GFF252at 268.958 kb on + strand, within GFF252at 268.958 kb on + strand, within GFF252at 268.959 kb on - strand, within GFF252at 268.959 kb on - strand, within GFF252at 268.973 kb on + strand, within GFF252at 268.973 kb on + strand, within GFF252at 269.336 kb on + strand, within GFF252at 269.336 kb on + strand, within GFF252at 269.337 kb on - strand, within GFF252at 269.337 kb on - strand, within GFF252at 269.337 kb on - strand, within GFF252at 269.337 kb on - strand, within GFF252at 269.337 kb on - strand, within GFF252at 269.337 kb on - strand, within GFF252at 269.337 kb on - strand, within GFF252at 269.337 kb on - strand, within GFF252at 269.438 kb on + strand, within GFF252at 269.438 kb on + strand, within GFF252at 269.438 kb on + strand, within GFF252at 269.438 kb on + strand, within GFF252at 269.438 kb on + strand, within GFF252at 269.438 kb on + strand, within GFF252at 269.438 kb on + strand, within GFF252at 269.439 kb on - strand, within GFF252at 269.439 kb on - strand, within GFF252at 269.439 kb on - strand, within GFF252at 269.487 kb on - strand, within GFF252at 269.513 kb on + strand, within GFF252at 269.513 kb on + strand, within GFF252at 269.514 kb on - strand, within GFF252at 269.514 kb on - strand, within GFF252at 269.514 kb on - strand, within GFF252at 269.784 kb on - strand, within GFF252at 269.912 kb on + strand, within GFF252at 269.912 kb on + strand, within GFF252at 269.912 kb on + strand, within GFF252at 269.912 kb on + strand, within GFF252at 269.912 kb on + strand, within GFF252at 269.912 kb on + strand, within GFF252at 269.912 kb on + strand, within GFF252at 269.913 kb on - strand, within GFF252at 269.936 kb on + strandat 269.936 kb on + strandat 270.072 kb on - strandat 270.072 kb on - strandat 270.072 kb on - strandat 270.072 kb on - strandat 270.072 kb on - strandat 270.125 kb on + strand, within GFF253at 270.125 kb on + strand, within GFF253at 270.126 kb on - strand, within GFF253at 270.400 kb on + strandat 270.400 kb on + strandat 270.401 kb on - strandat 270.401 kb on - strandat 270.401 kb on - strandat 270.401 kb on - strandat 270.441 kb on + strandat 270.441 kb on + strandat 270.445 kb on + strandat 270.445 kb on + strandat 270.445 kb on + strandat 270.446 kb on - strandat 270.446 kb on - strandat 270.446 kb on - strandat 270.446 kb on - strandat 270.446 kb on - strandat 270.465 kb on + strandat 270.465 kb on + strandat 270.466 kb on - strandat 270.466 kb on - strandat 270.479 kb on + strandat 270.480 kb on - strandat 270.480 kb on - strandat 270.480 kb on - strandat 270.480 kb on - strandat 270.517 kb on - strandat 270.528 kb on + strandat 270.528 kb on + strandat 270.694 kb on + strand, within GFF254at 270.694 kb on + strand, within GFF254at 270.694 kb on + strand, within GFF254at 270.694 kb on + strand, within GFF254at 270.694 kb on + strand, within GFF254at 270.694 kb on + strand, within GFF254at 270.694 kb on + strand, within GFF254at 270.695 kb on - strand, within GFF254at 270.695 kb on - strand, within GFF254at 270.695 kb on - strand, within GFF254at 270.695 kb on - strand, within GFF254at 270.695 kb on - strand, within GFF254at 270.695 kb on - strand, within GFF254at 270.758 kb on - strand, within GFF254at 270.817 kb on + strand, within GFF254at 270.817 kb on + strand, within GFF254at 270.817 kb on + strand, within GFF254at 270.818 kb on - strand, within GFF254at 270.818 kb on - strand, within GFF254at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 1
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267,810 + +0.1
267,811 - -0.9
267,811 - +1.0
267,811 - +0.8
267,909 + -0.9
267,910 - -0.2
267,911 + -0.7
268,041 + GFF251 0.16 +0.7
268,041 + GFF251 0.16 -0.2
268,041 + GFF251 0.16 +2.0
268,041 + GFF251 0.16 +0.5
268,041 + GFF251 0.16 -0.2
268,041 + GFF251 0.16 +0.2
268,042 - GFF251 0.16 -1.3
268,042 - GFF251 0.16 +0.5
268,042 - GFF251 0.16 +0.1
268,042 - GFF251 0.16 -0.0
268,162 - GFF251 0.31 -0.3
268,317 + GFF251 0.50 -0.5
268,317 + GFF251 0.50 -0.1
268,318 - GFF251 0.50 -0.6
268,318 - GFF251 0.50 +1.3
268,318 - GFF251 0.50 -0.3
268,318 - GFF251 0.50 -0.3
268,509 + GFF251 0.74 +0.5
268,587 + GFF251 0.84 +0.4
268,588 - GFF251 0.84 -2.5
268,588 - GFF251 0.84 +1.5
268,827 - -0.3
268,827 - +0.2
268,908 - GFF252 0.10 -0.4
268,908 - GFF252 0.10 +0.9
268,958 + GFF252 0.14 -0.9
268,958 + GFF252 0.14 -1.1
268,959 - GFF252 0.14 -0.3
268,959 - GFF252 0.14 -0.2
268,973 + GFF252 0.15 -1.9
268,973 + GFF252 0.15 -0.3
269,336 + GFF252 0.44 -1.9
269,336 + GFF252 0.44 -0.7
269,337 - GFF252 0.44 -0.0
269,337 - GFF252 0.44 +0.5
269,337 - GFF252 0.44 -0.5
269,337 - GFF252 0.44 -0.6
269,337 - GFF252 0.44 +0.3
269,337 - GFF252 0.44 +0.9
269,337 - GFF252 0.44 -0.2
269,337 - GFF252 0.44 -0.6
269,438 + GFF252 0.51 -1.5
269,438 + GFF252 0.51 +0.4
269,438 + GFF252 0.51 -0.2
269,438 + GFF252 0.51 +0.0
269,438 + GFF252 0.51 -0.8
269,438 + GFF252 0.51 -0.1
269,438 + GFF252 0.51 +0.3
269,439 - GFF252 0.52 +0.2
269,439 - GFF252 0.52 -0.0
269,439 - GFF252 0.52 -0.0
269,487 - GFF252 0.55 +0.3
269,513 + GFF252 0.57 -0.5
269,513 + GFF252 0.57 -0.0
269,514 - GFF252 0.57 -0.2
269,514 - GFF252 0.57 -0.9
269,514 - GFF252 0.57 +0.4
269,784 - GFF252 0.79 -0.0
269,912 + GFF252 0.89 -0.2
269,912 + GFF252 0.89 -0.5
269,912 + GFF252 0.89 +0.1
269,912 + GFF252 0.89 -0.3
269,912 + GFF252 0.89 -0.2
269,912 + GFF252 0.89 -1.8
269,912 + GFF252 0.89 -0.3
269,913 - GFF252 0.89 -1.5
269,936 + -1.0
269,936 + -0.8
270,072 - -0.2
270,072 - +1.1
270,072 - -0.2
270,072 - +0.1
270,072 - -0.5
270,125 + GFF253 0.18 -0.5
270,125 + GFF253 0.18 -0.5
270,126 - GFF253 0.18 +0.5
270,400 + +0.3
270,400 + -0.4
270,401 - -0.4
270,401 - +0.3
270,401 - +0.2
270,401 - -0.3
270,441 + -0.2
270,441 + -0.1
270,445 + +0.1
270,445 + -0.3
270,445 + +0.4
270,446 - +0.1
270,446 - +0.1
270,446 - -0.1
270,446 - +0.2
270,446 - -0.1
270,465 + -0.2
270,465 + +1.4
270,466 - +0.2
270,466 - +0.3
270,479 + -0.5
270,480 - +0.0
270,480 - +0.1
270,480 - +0.4
270,480 - +0.0
270,517 - +0.2
270,528 + +0.1
270,528 + -0.1
270,694 + GFF254 0.13 -0.1
270,694 + GFF254 0.13 -0.3
270,694 + GFF254 0.13 -0.2
270,694 + GFF254 0.13 -0.6
270,694 + GFF254 0.13 -0.3
270,694 + GFF254 0.13 -0.9
270,694 + GFF254 0.13 +0.9
270,695 - GFF254 0.14 +0.8
270,695 - GFF254 0.14 -0.1
270,695 - GFF254 0.14 +0.8
270,695 - GFF254 0.14 +0.9
270,695 - GFF254 0.14 +0.1
270,695 - GFF254 0.14 +1.8
270,758 - GFF254 0.43 +1.8
270,817 + GFF254 0.71 -0.3
270,817 + GFF254 0.71 -0.0
270,817 + GFF254 0.71 -0.1
270,818 - GFF254 0.71 +0.2
270,818 - GFF254 0.71 -2.0
271,050 + GFF255 0.12 -0.4
271,050 + GFF255 0.12 -0.1
271,050 + GFF255 0.12 +0.2
271,050 + GFF255 0.12 -0.3
271,050 + GFF255 0.12 +0.1
271,050 + GFF255 0.12 -0.3
271,050 + GFF255 0.12 +0.0
271,050 + GFF255 0.12 +0.4
271,050 + GFF255 0.12 +1.7
271,050 + GFF255 0.12 -0.0
271,050 + GFF255 0.12 +0.5
271,050 + GFF255 0.12 -0.0
271,050 + GFF255 0.12 +0.1
271,051 - GFF255 0.12 -0.1
271,051 - GFF255 0.12 -0.7
271,051 - GFF255 0.12 -0.2
271,051 - GFF255 0.12 -0.7
271,051 - GFF255 0.12 +1.2
271,051 - GFF255 0.12 -0.7
271,051 - GFF255 0.12 -0.7
271,051 - GFF255 0.12 -0.3
271,051 - GFF255 0.12 -0.5

Or see this region's nucleotide sequence