Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1978

Experiment: Ying_sugar7 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1976 and GFF1977 are separated by 4 nucleotidesGFF1977 and GFF1978 are separated by 37 nucleotidesGFF1978 and GFF1979 are separated by 33 nucleotides GFF1976 - Transcriptional regulator, at 851,219 to 852,163 GFF1976 GFF1977 - peptidase M14, carboxypeptidase A, at 852,168 to 853,046 GFF1977 GFF1978 - BEC protein, at 853,084 to 854,340 GFF1978 GFF1979 - Beta-lactamase class C and other penicillin binding proteins, at 854,374 to 855,615 GFF1979 Position (kb) 853 854 855Strain fitness (log2 ratio) -1 0 1at 852.352 kb on + strand, within GFF1977at 852.353 kb on - strand, within GFF1977at 852.394 kb on + strand, within GFF1977at 852.394 kb on + strand, within GFF1977at 852.395 kb on - strand, within GFF1977at 852.395 kb on - strand, within GFF1977at 852.395 kb on - strand, within GFF1977at 852.586 kb on + strand, within GFF1977at 852.587 kb on - strand, within GFF1977at 852.587 kb on - strand, within GFF1977at 852.587 kb on - strand, within GFF1977at 852.587 kb on - strand, within GFF1977at 852.850 kb on + strand, within GFF1977at 853.057 kb on + strandat 853.058 kb on - strandat 853.058 kb on - strandat 853.058 kb on - strandat 853.109 kb on + strandat 853.109 kb on + strandat 853.109 kb on + strandat 853.109 kb on + strandat 853.109 kb on + strandat 853.110 kb on - strandat 853.110 kb on - strandat 853.110 kb on - strandat 853.191 kb on - strandat 853.286 kb on + strand, within GFF1978at 853.286 kb on + strand, within GFF1978at 853.287 kb on - strand, within GFF1978at 853.287 kb on - strand, within GFF1978at 853.287 kb on - strand, within GFF1978at 853.298 kb on + strand, within GFF1978at 853.298 kb on + strand, within GFF1978at 853.299 kb on - strand, within GFF1978at 853.299 kb on - strand, within GFF1978at 853.422 kb on - strand, within GFF1978at 853.469 kb on + strand, within GFF1978at 853.469 kb on + strand, within GFF1978at 853.470 kb on - strand, within GFF1978at 853.470 kb on - strand, within GFF1978at 853.470 kb on - strand, within GFF1978at 853.488 kb on - strand, within GFF1978at 853.511 kb on + strand, within GFF1978at 853.512 kb on - strand, within GFF1978at 853.516 kb on - strand, within GFF1978at 853.565 kb on + strand, within GFF1978at 853.565 kb on + strand, within GFF1978at 853.566 kb on - strand, within GFF1978at 853.709 kb on + strand, within GFF1978at 853.709 kb on + strand, within GFF1978at 853.709 kb on + strand, within GFF1978at 853.709 kb on + strand, within GFF1978at 853.709 kb on + strand, within GFF1978at 853.710 kb on - strand, within GFF1978at 853.710 kb on - strand, within GFF1978at 853.710 kb on - strand, within GFF1978at 853.769 kb on + strand, within GFF1978at 853.770 kb on - strand, within GFF1978at 853.770 kb on - strand, within GFF1978at 853.772 kb on + strand, within GFF1978at 853.773 kb on - strand, within GFF1978at 853.907 kb on + strand, within GFF1978at 853.907 kb on + strand, within GFF1978at 854.096 kb on + strand, within GFF1978at 854.096 kb on + strand, within GFF1978at 854.096 kb on + strand, within GFF1978at 854.096 kb on + strand, within GFF1978at 854.096 kb on + strand, within GFF1978at 854.096 kb on + strand, within GFF1978at 854.096 kb on + strand, within GFF1978at 854.096 kb on + strand, within GFF1978at 854.096 kb on + strand, within GFF1978at 854.096 kb on + strand, within GFF1978at 854.096 kb on + strand, within GFF1978at 854.096 kb on + strand, within GFF1978at 854.096 kb on + strand, within GFF1978at 854.096 kb on + strand, within GFF1978at 854.096 kb on + strand, within GFF1978at 854.097 kb on - strand, within GFF1978at 854.097 kb on - strand, within GFF1978at 854.097 kb on - strand, within GFF1978at 854.097 kb on - strand, within GFF1978at 854.106 kb on - strand, within GFF1978at 854.597 kb on + strand, within GFF1979at 854.598 kb on - strand, within GFF1979at 854.600 kb on + strand, within GFF1979at 854.601 kb on - strand, within GFF1979at 854.643 kb on - strand, within GFF1979at 854.666 kb on + strand, within GFF1979at 854.666 kb on + strand, within GFF1979at 854.889 kb on - strand, within GFF1979at 854.889 kb on - strand, within GFF1979at 855.128 kb on + strand, within GFF1979at 855.128 kb on + strand, within GFF1979at 855.128 kb on + strand, within GFF1979at 855.128 kb on + strand, within GFF1979at 855.128 kb on + strand, within GFF1979at 855.128 kb on + strand, within GFF1979at 855.129 kb on - strand, within GFF1979at 855.129 kb on - strand, within GFF1979at 855.252 kb on - strand, within GFF1979at 855.323 kb on + strand, within GFF1979at 855.323 kb on + strand, within GFF1979at 855.324 kb on - strand, within GFF1979at 855.324 kb on - strand, within GFF1979at 855.338 kb on + strand, within GFF1979

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 1
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852,352 + GFF1977 0.21 +1.2
852,353 - GFF1977 0.21 -0.9
852,394 + GFF1977 0.26 +0.5
852,394 + GFF1977 0.26 -0.2
852,395 - GFF1977 0.26 +0.1
852,395 - GFF1977 0.26 +0.2
852,395 - GFF1977 0.26 -0.4
852,586 + GFF1977 0.48 +0.1
852,587 - GFF1977 0.48 +0.4
852,587 - GFF1977 0.48 +0.5
852,587 - GFF1977 0.48 +1.2
852,587 - GFF1977 0.48 +1.2
852,850 + GFF1977 0.78 +0.6
853,057 + -1.0
853,058 - -0.1
853,058 - +0.2
853,058 - -0.0
853,109 + -1.3
853,109 + -0.3
853,109 + +1.2
853,109 + -0.8
853,109 + -0.5
853,110 - +1.1
853,110 - -0.1
853,110 - -0.1
853,191 - +0.0
853,286 + GFF1978 0.16 -0.0
853,286 + GFF1978 0.16 +0.3
853,287 - GFF1978 0.16 -0.9
853,287 - GFF1978 0.16 +0.1
853,287 - GFF1978 0.16 -1.3
853,298 + GFF1978 0.17 +0.6
853,298 + GFF1978 0.17 -0.1
853,299 - GFF1978 0.17 +0.5
853,299 - GFF1978 0.17 -0.5
853,422 - GFF1978 0.27 +0.1
853,469 + GFF1978 0.31 -0.2
853,469 + GFF1978 0.31 -0.5
853,470 - GFF1978 0.31 -1.5
853,470 - GFF1978 0.31 +0.7
853,470 - GFF1978 0.31 -1.3
853,488 - GFF1978 0.32 -1.3
853,511 + GFF1978 0.34 -0.5
853,512 - GFF1978 0.34 +0.3
853,516 - GFF1978 0.34 -0.1
853,565 + GFF1978 0.38 +0.6
853,565 + GFF1978 0.38 -1.0
853,566 - GFF1978 0.38 -1.3
853,709 + GFF1978 0.50 -0.6
853,709 + GFF1978 0.50 +0.1
853,709 + GFF1978 0.50 +0.1
853,709 + GFF1978 0.50 -0.7
853,709 + GFF1978 0.50 +0.5
853,710 - GFF1978 0.50 +1.1
853,710 - GFF1978 0.50 +0.1
853,710 - GFF1978 0.50 -0.4
853,769 + GFF1978 0.54 +0.2
853,770 - GFF1978 0.55 -0.2
853,770 - GFF1978 0.55 +0.7
853,772 + GFF1978 0.55 +0.2
853,773 - GFF1978 0.55 -0.7
853,907 + GFF1978 0.65 +0.4
853,907 + GFF1978 0.65 -0.4
854,096 + GFF1978 0.81 +0.1
854,096 + GFF1978 0.81 +0.2
854,096 + GFF1978 0.81 +0.3
854,096 + GFF1978 0.81 +0.6
854,096 + GFF1978 0.81 +0.3
854,096 + GFF1978 0.81 +0.4
854,096 + GFF1978 0.81 +0.7
854,096 + GFF1978 0.81 +0.5
854,096 + GFF1978 0.81 -0.4
854,096 + GFF1978 0.81 -0.5
854,096 + GFF1978 0.81 -0.4
854,096 + GFF1978 0.81 -0.4
854,096 + GFF1978 0.81 +0.1
854,096 + GFF1978 0.81 -0.1
854,096 + GFF1978 0.81 -0.3
854,097 - GFF1978 0.81 +1.3
854,097 - GFF1978 0.81 -0.5
854,097 - GFF1978 0.81 -0.6
854,097 - GFF1978 0.81 +0.1
854,106 - GFF1978 0.81 -0.4
854,597 + GFF1979 0.18 -0.2
854,598 - GFF1979 0.18 +1.3
854,600 + GFF1979 0.18 -1.2
854,601 - GFF1979 0.18 +0.2
854,643 - GFF1979 0.22 -0.3
854,666 + GFF1979 0.24 +1.7
854,666 + GFF1979 0.24 +0.3
854,889 - GFF1979 0.41 +0.5
854,889 - GFF1979 0.41 -0.0
855,128 + GFF1979 0.61 -0.3
855,128 + GFF1979 0.61 +0.5
855,128 + GFF1979 0.61 -0.2
855,128 + GFF1979 0.61 -0.5
855,128 + GFF1979 0.61 -1.3
855,128 + GFF1979 0.61 +0.2
855,129 - GFF1979 0.61 -0.6
855,129 - GFF1979 0.61 -0.6
855,252 - GFF1979 0.71 +1.1
855,323 + GFF1979 0.76 -0.1
855,323 + GFF1979 0.76 -0.6
855,324 - GFF1979 0.76 -0.3
855,324 - GFF1979 0.76 +0.4
855,338 + GFF1979 0.78 +0.4

Or see this region's nucleotide sequence