Experiment: Ying_sugar7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1958 and GFF1959 are separated by 178 nucleotides GFF1959 and GFF1960 are separated by 133 nucleotides GFF1960 and GFF1961 overlap by 9 nucleotides GFF1961 and GFF1962 are separated by 140 nucleotides
GFF1958 - ATP-dependent DNA helicase RecQ, at 830,451 to 832,364
GFF1958
GFF1959 - hypothetical protein, at 832,543 to 832,893
GFF1959
GFF1960 - Cell division protein FtsH (EC 3.4.24.-), at 833,027 to 835,327
GFF1960
GFF1961 - hypothetical protein, at 835,319 to 835,456
GFF1961
GFF1962 - Threonine dehydratase (EC 4.3.1.19), at 835,597 to 836,796
GFF1962
Position (kb) 833
834
835
836 Strain fitness (log2 ratio) -2
-1
0
1
2 at 832.323 kb on + strand at 832.323 kb on + strand at 832.323 kb on + strand at 832.324 kb on - strand at 832.324 kb on - strand at 832.324 kb on - strand at 832.394 kb on + strand at 832.394 kb on + strand at 832.395 kb on - strand at 832.395 kb on - strand at 832.398 kb on + strand at 832.405 kb on + strand at 832.406 kb on - strand at 832.406 kb on - strand at 832.490 kb on + strand at 832.491 kb on - strand at 832.584 kb on - strand, within GFF1959 at 832.748 kb on + strand, within GFF1959 at 832.847 kb on - strand, within GFF1959 at 833.418 kb on + strand, within GFF1960 at 833.418 kb on + strand, within GFF1960 at 833.418 kb on + strand, within GFF1960 at 833.418 kb on + strand, within GFF1960 at 833.418 kb on + strand, within GFF1960 at 833.418 kb on + strand, within GFF1960 at 833.418 kb on + strand, within GFF1960 at 833.419 kb on - strand, within GFF1960 at 833.419 kb on - strand, within GFF1960 at 833.704 kb on - strand, within GFF1960 at 833.736 kb on + strand, within GFF1960 at 833.736 kb on + strand, within GFF1960 at 833.737 kb on - strand, within GFF1960 at 834.045 kb on + strand, within GFF1960 at 834.045 kb on + strand, within GFF1960 at 834.045 kb on + strand, within GFF1960 at 834.046 kb on - strand, within GFF1960 at 834.046 kb on - strand, within GFF1960 at 834.354 kb on + strand, within GFF1960 at 834.435 kb on + strand, within GFF1960 at 834.436 kb on - strand, within GFF1960 at 834.598 kb on - strand, within GFF1960 at 834.777 kb on + strand, within GFF1960 at 834.838 kb on - strand, within GFF1960 at 834.838 kb on - strand, within GFF1960 at 834.855 kb on + strand, within GFF1960 at 834.856 kb on - strand, within GFF1960 at 834.856 kb on - strand, within GFF1960 at 835.014 kb on + strand, within GFF1960 at 835.014 kb on + strand, within GFF1960 at 835.216 kb on + strand at 835.216 kb on + strand at 835.217 kb on - strand at 835.492 kb on + strand at 835.492 kb on + strand at 835.493 kb on - strand at 835.525 kb on + strand at 835.526 kb on - strand at 835.526 kb on - strand at 835.732 kb on + strand, within GFF1962 at 835.732 kb on + strand, within GFF1962 at 835.732 kb on + strand, within GFF1962 at 835.733 kb on - strand, within GFF1962 at 835.733 kb on - strand, within GFF1962 at 835.849 kb on + strand, within GFF1962 at 835.850 kb on - strand, within GFF1962 at 835.850 kb on - strand, within GFF1962 at 835.850 kb on - strand, within GFF1962 at 836.033 kb on - strand, within GFF1962 at 836.033 kb on - strand, within GFF1962 at 836.033 kb on - strand, within GFF1962
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 1 remove 832,323 + -0.7 832,323 + +0.0 832,323 + -0.1 832,324 - +0.2 832,324 - +2.2 832,324 - +0.3 832,394 + -0.9 832,394 + -1.5 832,395 - -0.2 832,395 - -0.1 832,398 + +1.4 832,405 + +0.0 832,406 - +0.1 832,406 - -0.4 832,490 + +0.2 832,491 - +0.1 832,584 - GFF1959 0.12 +0.3 832,748 + GFF1959 0.58 +0.4 832,847 - GFF1959 0.87 -0.3 833,418 + GFF1960 0.17 -1.1 833,418 + GFF1960 0.17 -1.8 833,418 + GFF1960 0.17 -0.3 833,418 + GFF1960 0.17 -0.7 833,418 + GFF1960 0.17 -1.6 833,418 + GFF1960 0.17 -0.8 833,418 + GFF1960 0.17 -0.6 833,419 - GFF1960 0.17 -1.5 833,419 - GFF1960 0.17 -0.7 833,704 - GFF1960 0.29 -1.8 833,736 + GFF1960 0.31 -0.4 833,736 + GFF1960 0.31 -0.8 833,737 - GFF1960 0.31 -1.5 834,045 + GFF1960 0.44 -0.8 834,045 + GFF1960 0.44 -1.3 834,045 + GFF1960 0.44 -0.8 834,046 - GFF1960 0.44 -0.9 834,046 - GFF1960 0.44 +0.1 834,354 + GFF1960 0.58 -0.2 834,435 + GFF1960 0.61 -0.5 834,436 - GFF1960 0.61 -2.2 834,598 - GFF1960 0.68 -0.6 834,777 + GFF1960 0.76 -0.5 834,838 - GFF1960 0.79 -0.3 834,838 - GFF1960 0.79 -0.3 834,855 + GFF1960 0.79 -0.3 834,856 - GFF1960 0.79 +1.0 834,856 - GFF1960 0.79 -0.5 835,014 + GFF1960 0.86 -0.2 835,014 + GFF1960 0.86 -1.3 835,216 + -1.4 835,216 + -0.3 835,217 - -0.5 835,492 + +0.9 835,492 + -0.4 835,493 - -1.2 835,525 + -1.0 835,526 - +1.1 835,526 - +0.4 835,732 + GFF1962 0.11 +0.6 835,732 + GFF1962 0.11 +0.2 835,732 + GFF1962 0.11 +0.6 835,733 - GFF1962 0.11 +0.6 835,733 - GFF1962 0.11 -0.9 835,849 + GFF1962 0.21 +0.4 835,850 - GFF1962 0.21 +1.4 835,850 - GFF1962 0.21 -0.2 835,850 - GFF1962 0.21 +0.5 836,033 - GFF1962 0.36 +0.2 836,033 - GFF1962 0.36 +0.7 836,033 - GFF1962 0.36 +0.0
Or see this region's nucleotide sequence