Experiment: Ying_sugar7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1942 and GFF1943 are separated by 88 nucleotides GFF1943 and GFF1944 are separated by 5 nucleotides GFF1944 and GFF1945 are separated by 42 nucleotides GFF1945 and GFF1946 are separated by 49 nucleotides
GFF1942 - Beta-lactamase (EC 3.5.2.6), at 815,849 to 816,715
GFF1942
GFF1943 - Glycine cleavage system transcriptional activator, at 816,804 to 817,685
GFF1943
GFF1944 - Cyanate hydratase (EC 4.2.1.104), at 817,691 to 818,134
GFF1944
GFF1945 - Cyanate ABC transporter, ATP-binding protein, at 818,177 to 818,974
GFF1945
GFF1946 - Cyanate ABC transporter, permease protein, at 819,024 to 819,887
GFF1946
Position (kb) 817
818
819 Strain fitness (log2 ratio) -1
0
1 at 817.704 kb on + strand at 817.705 kb on - strand at 817.705 kb on - strand at 817.705 kb on - strand at 817.866 kb on + strand, within GFF1944 at 817.866 kb on + strand, within GFF1944 at 817.866 kb on + strand, within GFF1944 at 817.876 kb on - strand, within GFF1944 at 817.876 kb on - strand, within GFF1944 at 817.920 kb on + strand, within GFF1944 at 817.921 kb on - strand, within GFF1944 at 818.232 kb on + strand at 818.232 kb on + strand at 818.232 kb on + strand at 818.232 kb on + strand at 818.235 kb on + strand at 818.236 kb on - strand at 818.236 kb on - strand at 818.236 kb on - strand at 818.236 kb on - strand at 818.319 kb on + strand, within GFF1945 at 818.931 kb on + strand at 819.035 kb on - strand at 819.035 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 1 remove 817,704 + -0.1 817,705 - -1.4 817,705 - +0.0 817,705 - -0.6 817,866 + GFF1944 0.39 -0.0 817,866 + GFF1944 0.39 +0.2 817,866 + GFF1944 0.39 +0.4 817,876 - GFF1944 0.42 +1.2 817,876 - GFF1944 0.42 +0.2 817,920 + GFF1944 0.52 +0.9 817,921 - GFF1944 0.52 +0.4 818,232 + -0.0 818,232 + +0.0 818,232 + +0.5 818,232 + -0.3 818,235 + -0.1 818,236 - -0.5 818,236 - +0.5 818,236 - +0.0 818,236 - -0.2 818,319 + GFF1945 0.18 +0.2 818,931 + -0.4 819,035 - -0.0 819,035 - -0.4
Or see this region's nucleotide sequence