Experiment: Ying_sugar7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1639 and GFF1640 overlap by 4 nucleotides GFF1640 and GFF1641 are separated by 25 nucleotides GFF1641 and GFF1642 are separated by 6 nucleotides GFF1642 and GFF1643 are separated by 1 nucleotides
GFF1639 - 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7), at 494,644 to 495,582
GFF1639
GFF1640 - amino acid ABC transporter, ATP-binding protein, at 495,579 to 496,328
GFF1640
GFF1641 - Phytanoyl-CoA dioxygenase, at 496,354 to 497,172
GFF1641
GFF1642 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4), at 497,179 to 497,955
GFF1642
GFF1643 - Dihydropyrimidinase (EC 3.5.2.2), at 497,957 to 499,372
GFF1643
Position (kb) 496
497
498 Strain fitness (log2 ratio) -1
0
1 at 495.401 kb on - strand, within GFF1639 at 495.401 kb on - strand, within GFF1639 at 495.425 kb on - strand, within GFF1639 at 495.425 kb on - strand, within GFF1639 at 495.425 kb on - strand, within GFF1639 at 495.425 kb on - strand, within GFF1639 at 495.640 kb on - strand at 496.670 kb on - strand, within GFF1641 at 497.137 kb on + strand at 497.622 kb on - strand, within GFF1642
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 1 remove 495,401 - GFF1639 0.81 -0.8 495,401 - GFF1639 0.81 +0.2 495,425 - GFF1639 0.83 +0.7 495,425 - GFF1639 0.83 -0.3 495,425 - GFF1639 0.83 -0.3 495,425 - GFF1639 0.83 +0.2 495,640 - +0.1 496,670 - GFF1641 0.39 +0.1 497,137 + -1.1 497,622 - GFF1642 0.57 +0.2
Or see this region's nucleotide sequence