Experiment: Ying_sugar7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF160 and GFF161 overlap by 4 nucleotides GFF161 and GFF162 are separated by 30 nucleotides
GFF160 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 172,998 to 174,515
GFF160
GFF161 - Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4), at 174,512 to 176,452
GFF161
GFF162 - hypothetical protein, at 176,483 to 177,607
GFF162
Position (kb) 174
175
176
177 Strain fitness (log2 ratio) -1
0
1
2
3 at 173.602 kb on + strand, within GFF160 at 173.603 kb on - strand, within GFF160 at 173.603 kb on - strand, within GFF160 at 173.603 kb on - strand, within GFF160 at 173.603 kb on - strand, within GFF160 at 173.861 kb on + strand, within GFF160 at 173.861 kb on + strand, within GFF160 at 173.938 kb on + strand, within GFF160 at 173.938 kb on + strand, within GFF160 at 174.023 kb on - strand, within GFF160 at 174.298 kb on + strand, within GFF160 at 174.969 kb on + strand, within GFF161 at 175.000 kb on - strand, within GFF161 at 175.000 kb on - strand, within GFF161 at 175.000 kb on - strand, within GFF161 at 175.332 kb on + strand, within GFF161 at 176.136 kb on + strand, within GFF161 at 176.217 kb on + strand, within GFF161 at 176.218 kb on - strand, within GFF161 at 176.218 kb on - strand, within GFF161 at 176.218 kb on - strand, within GFF161 at 176.886 kb on + strand, within GFF162 at 176.886 kb on + strand, within GFF162 at 177.205 kb on - strand, within GFF162 at 177.429 kb on + strand, within GFF162 at 177.429 kb on + strand, within GFF162 at 177.429 kb on + strand, within GFF162 at 177.429 kb on + strand, within GFF162 at 177.430 kb on - strand, within GFF162
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 1 remove 173,602 + GFF160 0.40 -0.0 173,603 - GFF160 0.40 +0.5 173,603 - GFF160 0.40 +0.3 173,603 - GFF160 0.40 -0.0 173,603 - GFF160 0.40 -0.4 173,861 + GFF160 0.57 +0.8 173,861 + GFF160 0.57 -0.7 173,938 + GFF160 0.62 +0.4 173,938 + GFF160 0.62 -0.0 174,023 - GFF160 0.68 +0.1 174,298 + GFF160 0.86 +0.0 174,969 + GFF161 0.24 +0.2 175,000 - GFF161 0.25 -0.3 175,000 - GFF161 0.25 -0.5 175,000 - GFF161 0.25 +1.5 175,332 + GFF161 0.42 -0.7 176,136 + GFF161 0.84 -0.6 176,217 + GFF161 0.88 -1.0 176,218 - GFF161 0.88 +1.0 176,218 - GFF161 0.88 -0.3 176,218 - GFF161 0.88 +0.6 176,886 + GFF162 0.36 +0.8 176,886 + GFF162 0.36 -0.6 177,205 - GFF162 0.64 -0.0 177,429 + GFF162 0.84 +0.3 177,429 + GFF162 0.84 -0.0 177,429 + GFF162 0.84 +0.5 177,429 + GFF162 0.84 +3.1 177,430 - GFF162 0.84 -0.2
Or see this region's nucleotide sequence