Experiment: Ying_sugar7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1479 and GFF1480 are separated by 4 nucleotides GFF1480 and GFF1481 are separated by 142 nucleotides GFF1481 and GFF1482 are separated by 96 nucleotides GFF1482 and GFF1483 are separated by 56 nucleotides
GFF1479 - Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61), at 329,152 to 330,252
GFF1479
GFF1480 - hypothetical protein, at 330,257 to 330,970
GFF1480
GFF1481 - blr2406; hypothetical protein, at 331,113 to 331,610
GFF1481
GFF1482 - FIG00581414: hypothetical protein, at 331,707 to 332,276
GFF1482
GFF1483 - Putative diheme cytochrome c-553, at 332,333 to 333,235
GFF1483
Position (kb) 331
332 Strain fitness (log2 ratio) -2
-1
0
1 at 331.276 kb on + strand, within GFF1481 at 331.288 kb on + strand, within GFF1481 at 331.288 kb on + strand, within GFF1481 at 331.289 kb on - strand, within GFF1481 at 331.369 kb on + strand, within GFF1481 at 331.369 kb on + strand, within GFF1481 at 331.369 kb on + strand, within GFF1481 at 331.369 kb on + strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.677 kb on - strand at 331.762 kb on - strand at 331.762 kb on - strand at 332.223 kb on + strand at 332.223 kb on + strand at 332.223 kb on + strand at 332.420 kb on + strand at 332.420 kb on + strand at 332.420 kb on + strand at 332.513 kb on + strand, within GFF1483 at 332.513 kb on + strand, within GFF1483 at 332.513 kb on + strand, within GFF1483 at 332.514 kb on - strand, within GFF1483 at 332.514 kb on - strand, within GFF1483 at 332.514 kb on - strand, within GFF1483 at 332.514 kb on - strand, within GFF1483 at 332.514 kb on - strand, within GFF1483 at 332.514 kb on - strand, within GFF1483 at 332.514 kb on - strand, within GFF1483 at 332.519 kb on + strand, within GFF1483 at 332.519 kb on + strand, within GFF1483 at 332.520 kb on - strand, within GFF1483
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 1 remove 331,276 + GFF1481 0.33 +0.4 331,288 + GFF1481 0.35 -0.6 331,288 + GFF1481 0.35 -0.0 331,289 - GFF1481 0.35 -0.8 331,369 + GFF1481 0.51 +1.0 331,369 + GFF1481 0.51 -0.0 331,369 + GFF1481 0.51 +0.5 331,369 + GFF1481 0.51 -0.3 331,370 - GFF1481 0.52 -0.3 331,370 - GFF1481 0.52 -0.2 331,370 - GFF1481 0.52 -0.1 331,370 - GFF1481 0.52 -1.5 331,370 - GFF1481 0.52 +0.2 331,370 - GFF1481 0.52 -1.8 331,370 - GFF1481 0.52 -0.5 331,370 - GFF1481 0.52 -0.9 331,370 - GFF1481 0.52 +0.8 331,677 - -0.1 331,762 - -0.7 331,762 - -0.6 332,223 + -0.4 332,223 + +0.7 332,223 + +0.4 332,420 + -0.3 332,420 + +0.4 332,420 + +0.1 332,513 + GFF1483 0.20 +1.3 332,513 + GFF1483 0.20 +1.4 332,513 + GFF1483 0.20 +1.0 332,514 - GFF1483 0.20 -0.3 332,514 - GFF1483 0.20 +0.5 332,514 - GFF1483 0.20 +0.2 332,514 - GFF1483 0.20 +0.2 332,514 - GFF1483 0.20 +0.8 332,514 - GFF1483 0.20 +0.4 332,514 - GFF1483 0.20 -0.2 332,519 + GFF1483 0.21 +0.1 332,519 + GFF1483 0.21 -0.1 332,520 - GFF1483 0.21 -0.4
Or see this region's nucleotide sequence