Experiment: Ying_sugar7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1432 and GFF1433 are separated by 151 nucleotides GFF1433 and GFF1434 are separated by 140 nucleotides GFF1434 and GFF1435 are separated by 12 nucleotides
GFF1432 - Flagellar biosynthesis protein FlhB, at 287,706 to 288,863
GFF1432
GFF1433 - hypothetical protein, at 289,015 to 290,508
GFF1433
GFF1434 - Chemotaxis response - phosphatase CheZ, at 290,649 to 291,275
GFF1434
GFF1435 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 291,288 to 291,674
GFF1435
Position (kb) 289
290
291 Strain fitness (log2 ratio) -2
-1
0
1
2 at 288.589 kb on + strand, within GFF1432 at 288.589 kb on + strand, within GFF1432 at 288.917 kb on + strand at 288.918 kb on - strand at 288.927 kb on + strand at 288.927 kb on + strand at 288.927 kb on + strand at 288.928 kb on - strand at 289.017 kb on - strand at 289.143 kb on - strand at 289.143 kb on - strand at 289.403 kb on + strand, within GFF1433 at 289.403 kb on + strand, within GFF1433 at 289.404 kb on - strand, within GFF1433 at 289.404 kb on - strand, within GFF1433 at 289.404 kb on - strand, within GFF1433 at 289.730 kb on + strand, within GFF1433 at 289.730 kb on + strand, within GFF1433 at 289.730 kb on + strand, within GFF1433 at 289.731 kb on - strand, within GFF1433 at 289.731 kb on - strand, within GFF1433 at 289.731 kb on - strand, within GFF1433 at 289.731 kb on - strand, within GFF1433 at 289.742 kb on + strand, within GFF1433 at 289.742 kb on + strand, within GFF1433 at 289.742 kb on + strand, within GFF1433 at 289.823 kb on + strand, within GFF1433 at 289.824 kb on - strand, within GFF1433 at 289.838 kb on + strand, within GFF1433 at 289.838 kb on + strand, within GFF1433 at 289.838 kb on + strand, within GFF1433 at 289.838 kb on + strand, within GFF1433 at 289.839 kb on - strand, within GFF1433 at 289.839 kb on - strand, within GFF1433 at 289.979 kb on + strand, within GFF1433 at 289.979 kb on + strand, within GFF1433 at 289.980 kb on - strand, within GFF1433 at 289.980 kb on - strand, within GFF1433 at 290.048 kb on + strand, within GFF1433 at 290.049 kb on - strand, within GFF1433 at 290.049 kb on - strand, within GFF1433 at 290.057 kb on + strand, within GFF1433 at 290.058 kb on - strand, within GFF1433 at 290.127 kb on - strand, within GFF1433 at 291.112 kb on + strand, within GFF1434 at 291.112 kb on + strand, within GFF1434 at 291.112 kb on + strand, within GFF1434 at 291.112 kb on + strand, within GFF1434 at 291.112 kb on + strand, within GFF1434 at 291.112 kb on + strand, within GFF1434 at 291.112 kb on + strand, within GFF1434 at 291.113 kb on - strand, within GFF1434 at 291.113 kb on - strand, within GFF1434 at 291.172 kb on + strand, within GFF1434 at 291.362 kb on - strand, within GFF1435
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 1 remove 288,589 + GFF1432 0.76 +0.1 288,589 + GFF1432 0.76 -0.2 288,917 + -1.0 288,918 - -0.4 288,927 + +0.4 288,927 + -0.7 288,927 + +0.5 288,928 - +0.3 289,017 - +0.0 289,143 - +0.6 289,143 - -2.3 289,403 + GFF1433 0.26 -0.4 289,403 + GFF1433 0.26 +0.1 289,404 - GFF1433 0.26 -0.1 289,404 - GFF1433 0.26 -0.1 289,404 - GFF1433 0.26 -0.2 289,730 + GFF1433 0.48 +0.1 289,730 + GFF1433 0.48 +0.3 289,730 + GFF1433 0.48 -0.3 289,731 - GFF1433 0.48 -0.8 289,731 - GFF1433 0.48 +0.0 289,731 - GFF1433 0.48 -0.9 289,731 - GFF1433 0.48 -0.4 289,742 + GFF1433 0.49 +1.8 289,742 + GFF1433 0.49 +0.0 289,742 + GFF1433 0.49 +0.5 289,823 + GFF1433 0.54 -0.3 289,824 - GFF1433 0.54 -0.0 289,838 + GFF1433 0.55 -0.2 289,838 + GFF1433 0.55 +0.3 289,838 + GFF1433 0.55 -0.7 289,838 + GFF1433 0.55 -0.2 289,839 - GFF1433 0.55 -0.1 289,839 - GFF1433 0.55 +0.2 289,979 + GFF1433 0.65 -0.0 289,979 + GFF1433 0.65 -0.3 289,980 - GFF1433 0.65 -0.0 289,980 - GFF1433 0.65 +0.9 290,048 + GFF1433 0.69 +0.2 290,049 - GFF1433 0.69 -0.1 290,049 - GFF1433 0.69 +0.8 290,057 + GFF1433 0.70 -0.3 290,058 - GFF1433 0.70 -0.4 290,127 - GFF1433 0.74 -0.6 291,112 + GFF1434 0.74 +0.2 291,112 + GFF1434 0.74 -0.0 291,112 + GFF1434 0.74 -0.4 291,112 + GFF1434 0.74 -0.5 291,112 + GFF1434 0.74 -0.0 291,112 + GFF1434 0.74 -1.3 291,112 + GFF1434 0.74 +0.2 291,113 - GFF1434 0.74 +0.2 291,113 - GFF1434 0.74 -0.3 291,172 + GFF1434 0.83 +0.7 291,362 - GFF1435 0.19 -0.9
Or see this region's nucleotide sequence