Experiment: Ying_sugar7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1031 and GFF1032 are separated by 218 nucleotides GFF1032 and GFF1033 are separated by 714 nucleotides
GFF1031 - Ortho-halobenzoate 1,2-dioxygenase alpha-ISP protein OhbB, at 768,962 to 770,155
GFF1031
GFF1032 - Transcriptional regulator, IclR family, at 770,374 to 771,144
GFF1032
GFF1033 - Transcription elongation factor GreB, at 771,859 to 772,416
GFF1033
Position (kb) 770
771
772 Strain fitness (log2 ratio) -2
-1
0
1
2 at 769.431 kb on + strand, within GFF1031 at 769.431 kb on + strand, within GFF1031 at 769.432 kb on - strand, within GFF1031 at 769.442 kb on - strand, within GFF1031 at 769.442 kb on - strand, within GFF1031 at 769.442 kb on - strand, within GFF1031 at 769.575 kb on + strand, within GFF1031 at 769.576 kb on - strand, within GFF1031 at 769.599 kb on + strand, within GFF1031 at 769.600 kb on - strand, within GFF1031 at 769.600 kb on - strand, within GFF1031 at 769.701 kb on + strand, within GFF1031 at 769.702 kb on - strand, within GFF1031 at 769.742 kb on + strand, within GFF1031 at 769.829 kb on + strand, within GFF1031 at 769.830 kb on - strand, within GFF1031 at 769.875 kb on + strand, within GFF1031 at 769.891 kb on - strand, within GFF1031 at 769.891 kb on - strand, within GFF1031 at 769.891 kb on - strand, within GFF1031 at 769.974 kb on + strand, within GFF1031 at 769.974 kb on + strand, within GFF1031 at 769.975 kb on - strand, within GFF1031 at 770.076 kb on + strand at 770.076 kb on + strand at 770.076 kb on + strand at 770.076 kb on + strand at 770.076 kb on + strand at 770.076 kb on + strand at 770.076 kb on + strand at 770.077 kb on - strand at 770.077 kb on - strand at 770.077 kb on - strand at 770.077 kb on - strand at 770.077 kb on - strand at 770.077 kb on - strand at 770.077 kb on - strand at 770.098 kb on - strand at 770.139 kb on + strand at 770.140 kb on - strand at 770.140 kb on - strand at 770.140 kb on - strand at 770.148 kb on + strand at 770.149 kb on - strand at 770.149 kb on - strand at 770.292 kb on + strand at 770.407 kb on + strand at 770.407 kb on + strand at 770.407 kb on + strand at 770.407 kb on + strand at 770.407 kb on + strand at 770.407 kb on + strand at 770.407 kb on + strand at 770.407 kb on + strand at 770.407 kb on + strand at 770.407 kb on + strand at 770.408 kb on - strand at 770.408 kb on - strand at 770.408 kb on - strand at 770.408 kb on - strand at 770.408 kb on - strand at 770.408 kb on - strand at 770.408 kb on - strand at 770.408 kb on - strand at 770.408 kb on - strand at 770.432 kb on + strand at 770.433 kb on - strand at 770.433 kb on - strand at 770.433 kb on - strand at 770.433 kb on - strand at 770.535 kb on + strand, within GFF1032 at 770.536 kb on - strand, within GFF1032 at 770.536 kb on - strand, within GFF1032 at 770.549 kb on + strand, within GFF1032 at 770.549 kb on + strand, within GFF1032 at 770.549 kb on + strand, within GFF1032 at 770.549 kb on + strand, within GFF1032 at 770.549 kb on + strand, within GFF1032 at 770.549 kb on + strand, within GFF1032 at 770.549 kb on + strand, within GFF1032 at 770.550 kb on - strand, within GFF1032 at 770.550 kb on - strand, within GFF1032 at 770.554 kb on + strand, within GFF1032 at 770.555 kb on - strand, within GFF1032 at 770.617 kb on + strand, within GFF1032 at 770.617 kb on + strand, within GFF1032 at 770.617 kb on + strand, within GFF1032 at 770.618 kb on - strand, within GFF1032 at 770.618 kb on - strand, within GFF1032 at 770.618 kb on - strand, within GFF1032 at 770.618 kb on - strand, within GFF1032 at 770.618 kb on - strand, within GFF1032 at 770.629 kb on - strand, within GFF1032 at 770.629 kb on - strand, within GFF1032 at 770.629 kb on - strand, within GFF1032 at 770.797 kb on + strand, within GFF1032 at 770.798 kb on - strand, within GFF1032 at 770.798 kb on - strand, within GFF1032 at 770.798 kb on - strand, within GFF1032 at 770.832 kb on + strand, within GFF1032 at 770.833 kb on - strand, within GFF1032 at 770.886 kb on + strand, within GFF1032 at 771.039 kb on + strand, within GFF1032 at 771.039 kb on + strand, within GFF1032 at 771.040 kb on - strand, within GFF1032 at 771.040 kb on - strand, within GFF1032 at 771.040 kb on - strand, within GFF1032 at 771.040 kb on - strand, within GFF1032 at 771.142 kb on + strand at 771.142 kb on + strand at 771.142 kb on + strand at 771.143 kb on - strand at 771.182 kb on + strand at 771.182 kb on + strand at 771.183 kb on - strand at 771.183 kb on - strand at 771.183 kb on - strand at 771.217 kb on + strand at 771.217 kb on + strand at 771.217 kb on + strand at 771.217 kb on + strand at 771.217 kb on + strand at 771.217 kb on + strand at 771.218 kb on - strand at 771.218 kb on - strand at 771.218 kb on - strand at 771.218 kb on - strand at 771.218 kb on - strand at 771.218 kb on - strand at 771.436 kb on + strand at 771.469 kb on + strand at 771.469 kb on + strand at 771.469 kb on + strand at 771.470 kb on - strand at 771.475 kb on - strand at 771.483 kb on + strand at 771.483 kb on + strand at 771.484 kb on - strand at 771.484 kb on - strand at 771.488 kb on + strand at 771.488 kb on + strand at 771.488 kb on + strand at 771.488 kb on + strand at 771.489 kb on - strand at 771.489 kb on - strand at 771.489 kb on - strand at 771.489 kb on - strand at 771.489 kb on - strand at 771.490 kb on + strand at 771.490 kb on + strand at 771.490 kb on + strand at 771.490 kb on + strand at 771.490 kb on + strand at 771.490 kb on + strand at 771.490 kb on + strand at 771.490 kb on + strand at 771.490 kb on + strand at 771.491 kb on - strand at 771.491 kb on - strand at 771.491 kb on - strand at 771.491 kb on - strand at 771.491 kb on - strand at 771.491 kb on - strand at 771.491 kb on - strand at 771.491 kb on - strand at 771.494 kb on + strand at 771.494 kb on + strand at 771.495 kb on - strand at 771.504 kb on + strand at 771.504 kb on + strand at 771.504 kb on + strand at 771.504 kb on + strand at 771.505 kb on - strand at 771.505 kb on - strand at 771.505 kb on - strand at 771.578 kb on + strand at 771.579 kb on - strand at 771.622 kb on - strand at 771.622 kb on - strand at 771.622 kb on - strand at 771.672 kb on + strand at 771.672 kb on + strand at 771.672 kb on + strand at 771.672 kb on + strand at 771.672 kb on + strand at 771.672 kb on + strand at 771.673 kb on - strand at 771.673 kb on - strand at 771.673 kb on - strand at 771.673 kb on - strand at 771.673 kb on - strand at 771.673 kb on - strand at 771.673 kb on - strand at 771.673 kb on - strand at 771.673 kb on - strand at 771.673 kb on - strand at 771.689 kb on + strand at 771.690 kb on - strand at 771.756 kb on - strand at 771.756 kb on - strand at 771.799 kb on + strand at 771.799 kb on + strand at 771.943 kb on + strand, within GFF1033 at 771.943 kb on + strand, within GFF1033 at 771.943 kb on + strand, within GFF1033 at 771.943 kb on + strand, within GFF1033 at 771.943 kb on + strand, within GFF1033 at 771.943 kb on + strand, within GFF1033 at 771.943 kb on + strand, within GFF1033 at 771.943 kb on + strand, within GFF1033 at 771.944 kb on - strand, within GFF1033 at 771.944 kb on - strand, within GFF1033 at 771.944 kb on - strand, within GFF1033 at 771.944 kb on - strand, within GFF1033 at 771.944 kb on - strand, within GFF1033 at 771.944 kb on - strand, within GFF1033 at 771.944 kb on - strand, within GFF1033 at 771.961 kb on + strand, within GFF1033 at 772.072 kb on + strand, within GFF1033 at 772.072 kb on + strand, within GFF1033 at 772.072 kb on + strand, within GFF1033 at 772.072 kb on + strand, within GFF1033 at 772.072 kb on + strand, within GFF1033 at 772.072 kb on + strand, within GFF1033 at 772.072 kb on + strand, within GFF1033 at 772.073 kb on - strand, within GFF1033 at 772.073 kb on - strand, within GFF1033 at 772.073 kb on - strand, within GFF1033 at 772.073 kb on - strand, within GFF1033 at 772.073 kb on - strand, within GFF1033 at 772.078 kb on + strand, within GFF1033 at 772.078 kb on + strand, within GFF1033 at 772.078 kb on + strand, within GFF1033 at 772.078 kb on + strand, within GFF1033 at 772.079 kb on + strand, within GFF1033 at 772.079 kb on - strand, within GFF1033 at 772.079 kb on - strand, within GFF1033
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 1 remove 769,431 + GFF1031 0.39 -0.1 769,431 + GFF1031 0.39 +0.7 769,432 - GFF1031 0.39 +0.2 769,442 - GFF1031 0.40 -0.1 769,442 - GFF1031 0.40 +0.3 769,442 - GFF1031 0.40 -1.6 769,575 + GFF1031 0.51 -0.2 769,576 - GFF1031 0.51 +0.4 769,599 + GFF1031 0.53 +1.5 769,600 - GFF1031 0.53 +0.3 769,600 - GFF1031 0.53 +0.0 769,701 + GFF1031 0.62 -0.1 769,702 - GFF1031 0.62 +0.2 769,742 + GFF1031 0.65 -1.1 769,829 + GFF1031 0.73 -1.5 769,830 - GFF1031 0.73 +0.3 769,875 + GFF1031 0.76 +0.2 769,891 - GFF1031 0.78 -0.8 769,891 - GFF1031 0.78 +0.3 769,891 - GFF1031 0.78 -0.3 769,974 + GFF1031 0.85 +0.7 769,974 + GFF1031 0.85 +0.1 769,975 - GFF1031 0.85 +0.3 770,076 + +0.3 770,076 + +0.3 770,076 + -0.1 770,076 + -0.2 770,076 + +0.2 770,076 + -1.9 770,076 + +1.1 770,077 - +0.2 770,077 - +0.3 770,077 - +0.2 770,077 - +0.5 770,077 - +2.5 770,077 - -0.1 770,077 - -0.1 770,098 - -0.1 770,139 + +0.3 770,140 - -0.3 770,140 - -0.1 770,140 - -1.0 770,148 + +0.9 770,149 - -0.2 770,149 - +0.0 770,292 + +0.3 770,407 + -0.8 770,407 + +0.6 770,407 + +0.2 770,407 + +0.9 770,407 + +0.0 770,407 + -0.5 770,407 + -0.1 770,407 + -0.3 770,407 + -0.7 770,407 + -0.1 770,408 - -0.6 770,408 - -0.3 770,408 - +0.8 770,408 - -0.7 770,408 - +0.1 770,408 - +0.4 770,408 - -0.8 770,408 - +0.1 770,408 - -0.1 770,432 + +0.3 770,433 - +0.6 770,433 - -0.4 770,433 - +0.8 770,433 - +0.8 770,535 + GFF1032 0.21 -0.1 770,536 - GFF1032 0.21 +0.1 770,536 - GFF1032 0.21 -1.1 770,549 + GFF1032 0.23 -0.4 770,549 + GFF1032 0.23 -0.6 770,549 + GFF1032 0.23 -0.0 770,549 + GFF1032 0.23 -0.5 770,549 + GFF1032 0.23 -0.5 770,549 + GFF1032 0.23 -0.4 770,549 + GFF1032 0.23 -0.3 770,550 - GFF1032 0.23 -0.1 770,550 - GFF1032 0.23 -0.2 770,554 + GFF1032 0.23 +0.0 770,555 - GFF1032 0.23 -0.1 770,617 + GFF1032 0.32 -0.3 770,617 + GFF1032 0.32 +0.1 770,617 + GFF1032 0.32 -0.6 770,618 - GFF1032 0.32 +0.0 770,618 - GFF1032 0.32 -0.0 770,618 - GFF1032 0.32 -0.6 770,618 - GFF1032 0.32 -0.1 770,618 - GFF1032 0.32 +0.2 770,629 - GFF1032 0.33 -0.2 770,629 - GFF1032 0.33 -0.4 770,629 - GFF1032 0.33 -0.4 770,797 + GFF1032 0.55 +0.7 770,798 - GFF1032 0.55 -0.1 770,798 - GFF1032 0.55 -0.1 770,798 - GFF1032 0.55 -0.3 770,832 + GFF1032 0.59 -0.1 770,833 - GFF1032 0.60 -0.2 770,886 + GFF1032 0.66 -0.4 771,039 + GFF1032 0.86 -1.2 771,039 + GFF1032 0.86 -0.3 771,040 - GFF1032 0.86 +0.7 771,040 - GFF1032 0.86 +0.3 771,040 - GFF1032 0.86 +0.5 771,040 - GFF1032 0.86 -0.2 771,142 + -0.1 771,142 + -0.2 771,142 + -0.6 771,143 - -0.5 771,182 + +0.2 771,182 + -0.8 771,183 - -0.2 771,183 - -0.5 771,183 - -0.4 771,217 + -2.1 771,217 + +0.5 771,217 + -0.2 771,217 + +1.1 771,217 + -0.2 771,217 + -0.8 771,218 - -0.6 771,218 - -0.1 771,218 - +0.5 771,218 - +0.1 771,218 - -0.5 771,218 - +0.5 771,436 + -0.5 771,469 + +0.4 771,469 + +0.1 771,469 + -0.2 771,470 - -1.6 771,475 - +0.1 771,483 + -1.1 771,483 + +0.2 771,484 - +1.5 771,484 - +0.7 771,488 + -0.5 771,488 + -0.7 771,488 + -0.4 771,488 + +0.0 771,489 - +0.5 771,489 - -0.3 771,489 - -0.3 771,489 - +0.2 771,489 - -0.7 771,490 + -0.1 771,490 + -0.5 771,490 + +0.0 771,490 + +0.0 771,490 + -0.1 771,490 + +0.7 771,490 + -0.1 771,490 + -1.2 771,490 + +1.0 771,491 - +0.6 771,491 - +0.6 771,491 - -0.1 771,491 - -0.3 771,491 - +0.5 771,491 - +0.0 771,491 - -0.1 771,491 - -0.1 771,494 + -0.0 771,494 + +0.4 771,495 - -0.3 771,504 + +0.3 771,504 + -0.2 771,504 + -0.2 771,504 + -0.5 771,505 - -0.3 771,505 - -0.1 771,505 - +0.1 771,578 + -1.6 771,579 - +1.3 771,622 - -0.2 771,622 - -0.1 771,622 - -0.1 771,672 + -0.0 771,672 + -0.1 771,672 + -0.1 771,672 + +1.0 771,672 + -0.1 771,672 + +0.1 771,673 - -0.0 771,673 - -0.6 771,673 - +0.1 771,673 - -0.8 771,673 - -0.0 771,673 - -0.1 771,673 - +1.0 771,673 - +0.4 771,673 - -0.6 771,673 - +0.6 771,689 + -0.2 771,690 - -0.6 771,756 - -0.4 771,756 - +0.3 771,799 + -0.2 771,799 + +0.0 771,943 + GFF1033 0.15 +0.4 771,943 + GFF1033 0.15 -0.4 771,943 + GFF1033 0.15 -2.6 771,943 + GFF1033 0.15 -0.1 771,943 + GFF1033 0.15 -0.2 771,943 + GFF1033 0.15 -1.6 771,943 + GFF1033 0.15 +0.5 771,943 + GFF1033 0.15 +0.3 771,944 - GFF1033 0.15 +0.0 771,944 - GFF1033 0.15 +0.3 771,944 - GFF1033 0.15 +0.9 771,944 - GFF1033 0.15 -0.4 771,944 - GFF1033 0.15 +0.7 771,944 - GFF1033 0.15 +0.5 771,944 - GFF1033 0.15 +0.3 771,961 + GFF1033 0.18 +0.4 772,072 + GFF1033 0.38 +0.4 772,072 + GFF1033 0.38 +0.4 772,072 + GFF1033 0.38 +0.1 772,072 + GFF1033 0.38 +0.5 772,072 + GFF1033 0.38 -0.2 772,072 + GFF1033 0.38 +0.9 772,072 + GFF1033 0.38 -0.2 772,073 - GFF1033 0.38 +0.0 772,073 - GFF1033 0.38 +0.2 772,073 - GFF1033 0.38 -0.6 772,073 - GFF1033 0.38 +0.3 772,073 - GFF1033 0.38 -0.2 772,078 + GFF1033 0.39 -0.2 772,078 + GFF1033 0.39 -0.1 772,078 + GFF1033 0.39 +0.3 772,078 + GFF1033 0.39 +0.6 772,079 + GFF1033 0.39 +1.2 772,079 - GFF1033 0.39 +0.7 772,079 - GFF1033 0.39 +0.9
Or see this region's nucleotide sequence