Experiment: Ying_sugar7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1026 and GFF1027 overlap by 1 nucleotides GFF1027 and GFF1028 are separated by 110 nucleotides GFF1028 and GFF1029 are separated by 25 nucleotides
GFF1026 - Ferredoxin reductase, at 764,664 to 765,839
GFF1026
GFF1027 - Ferredoxin, 2Fe-2S, at 765,839 to 766,090
GFF1027
GFF1028 - putative cytochrome P450 hydroxylase, at 766,201 to 767,421
GFF1028
GFF1029 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like, at 767,447 to 768,448
GFF1029
Position (kb) 766
767
768 Strain fitness (log2 ratio) -1
0
1 at 765.538 kb on + strand, within GFF1026 at 766.008 kb on + strand, within GFF1027 at 766.008 kb on + strand, within GFF1027 at 766.009 kb on - strand, within GFF1027 at 766.142 kb on + strand at 766.142 kb on + strand at 766.142 kb on + strand at 766.147 kb on - strand at 766.181 kb on - strand at 766.575 kb on - strand, within GFF1028 at 766.916 kb on + strand, within GFF1028 at 767.333 kb on + strand at 767.402 kb on + strand at 767.580 kb on + strand, within GFF1029 at 767.581 kb on - strand, within GFF1029 at 767.733 kb on + strand, within GFF1029 at 767.733 kb on + strand, within GFF1029 at 767.763 kb on + strand, within GFF1029 at 768.289 kb on + strand, within GFF1029 at 768.289 kb on + strand, within GFF1029 at 768.290 kb on - strand, within GFF1029 at 768.290 kb on - strand, within GFF1029
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 1 remove 765,538 + GFF1026 0.74 -0.1 766,008 + GFF1027 0.67 -0.5 766,008 + GFF1027 0.67 +0.2 766,009 - GFF1027 0.67 +0.2 766,142 + -0.5 766,142 + +0.4 766,142 + +0.4 766,147 - +0.6 766,181 - +0.6 766,575 - GFF1028 0.31 +0.9 766,916 + GFF1028 0.59 -0.0 767,333 + -0.5 767,402 + +1.4 767,580 + GFF1029 0.13 +0.2 767,581 - GFF1029 0.13 +0.8 767,733 + GFF1029 0.29 -0.6 767,733 + GFF1029 0.29 -0.2 767,763 + GFF1029 0.32 +1.0 768,289 + GFF1029 0.84 +0.3 768,289 + GFF1029 0.84 -0.3 768,290 - GFF1029 0.84 +0.6 768,290 - GFF1029 0.84 +0.1
Or see this region's nucleotide sequence