Strain Fitness in Escherichia fergusonii Becca around EFB2_04297

Experiment: BHIS_CaCl2 no phage control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control
4,517,765	-		EFB2_04295	0.85	+1.1
4,517,821	+		EFB2_04295	0.88	+2.4
4,517,822	-		EFB2_04295	0.88	+1.6
4,517,827	+		EFB2_04295	0.88	+1.9
4,517,828	-		EFB2_04295	0.88	+1.1
4,517,837	+		EFB2_04295	0.89	+1.1
4,517,837	+		EFB2_04295	0.89	+3.9
4,517,837	+		EFB2_04295	0.89	+1.1
4,517,838	-		EFB2_04295	0.89	+0.9
4,517,838	-		EFB2_04295	0.89	+2.9
4,517,842	+		EFB2_04295	0.89	+3.9
4,517,842	+		EFB2_04295	0.89	+0.9
4,517,843	-		EFB2_04295	0.89	+0.6
4,517,875	+				+2.9
4,517,875	+				+1.1
4,517,990	+				+1.9
4,517,990	+				+1.6
4,517,990	+				+0.8
4,517,991	-				+1.4
4,517,991	-				+1.1
4,518,051	+				+3.9
4,518,074	+				-1.2
4,518,074	+				-1.4
4,518,074	+				-1.8
4,518,074	+				+6.2
4,518,074	+				-3.1
4,518,074	+				+0.3
4,518,074	+				+1.2
4,518,074	+				+2.9
4,518,074	+				-1.0
4,518,074	+				-1.9
4,518,074	+				-0.4
4,518,074	+				-0.8
4,518,074	+				-2.4
4,518,075	-				+1.1
4,518,075	-				+2.9
4,518,075	-				-0.3
4,518,075	-				+1.6
4,518,075	-				+1.6
4,518,075	-				+1.9
4,518,075	-				+0.6
4,518,075	-				+1.9
4,518,079	+				-0.2
4,518,096	+				+1.4
4,518,096	+				-0.3
4,518,097	-				-0.3
4,518,097	-				+1.6
4,518,136	+				-1.8
4,518,136	+				-2.4
4,518,155	-				+0.2
4,518,209	+				-1.4
4,518,209	+				+6.3
4,518,209	+				-0.1
4,518,209	+				-0.4
4,518,210	-				+0.6
4,518,210	-				+0.5
4,518,237	+				-2.7
4,518,237	+				-0.5
4,518,237	+				+0.1
4,518,238	-				+1.1
4,518,245	+				+1.1
4,518,246	-				+1.1
4,518,254	+				+0.9
4,518,255	-				+2.4
4,518,255	-				+0.5
4,518,258	-				+2.4
4,518,258	-				+1.6
4,518,258	-				+0.9
4,518,338	+		EFB2_04296	0.21	+3.9
4,518,338	+		EFB2_04296	0.21	+2.4
4,518,339	-		EFB2_04296	0.22	+1.6
4,518,339	-		EFB2_04296	0.22	+2.4
4,518,379	+		EFB2_04296	0.30	+1.9
4,518,504	+		EFB2_04296	0.57	+0.4
4,518,504	+		EFB2_04296	0.57	+2.9
4,518,505	-		EFB2_04296	0.57	+1.4
4,518,505	-		EFB2_04296	0.57	+0.9
4,518,505	-		EFB2_04296	0.57	+1.1
4,518,557	+		EFB2_04296	0.68	+0.6
4,518,608	-		EFB2_04296	0.79	+1.4
4,518,704	+				+5.2
4,518,704	+				+0.5
4,518,704	+				+3.0
4,518,704	+				+0.1
4,518,704	+				+1.2
4,518,704	+				-1.0
4,518,704	+				+1.6
4,518,704	+				-0.4
4,518,704	+				-0.6
4,518,704	+				-0.2
4,518,705	-				-1.4
4,518,705	-				+0.7
4,518,705	-				+3.8
4,518,716	+				-3.5
4,518,716	+				+2.2
4,518,741	+				-0.9
4,518,741	+				+0.4
4,518,741	+				-2.7
4,518,742	-				-2.6
4,518,742	-				+1.8
4,518,750	-				-3.0
4,518,755	+				+0.6
4,518,755	+				-1.8
4,518,755	+				-1.0
4,518,755	+				+1.3
4,518,755	+				+3.3
4,518,756	-				-1.6
4,518,756	-				+1.6
4,518,756	-				-1.3
4,518,756	-				-1.8
4,518,756	-				+0.4
4,518,756	-				-1.9
4,518,756	-				-1.1
4,518,767	+				-1.6
4,518,767	+				+1.4
4,518,767	+				+5.4
4,518,767	+				+3.6
4,518,817	+		EFB2_04297	0.18	+2.6
4,518,817	+		EFB2_04297	0.18	+0.8
4,518,817	+		EFB2_04297	0.18	-2.6
4,518,818	-		EFB2_04297	0.18	-1.5
4,518,818	-		EFB2_04297	0.18	-0.3
4,518,822	+		EFB2_04297	0.19	-1.5
4,518,822	+		EFB2_04297	0.19	+2.5
4,518,822	+		EFB2_04297	0.19	+0.8
4,518,822	+		EFB2_04297	0.19	-0.4
4,518,822	+		EFB2_04297	0.19	+0.9
4,518,823	-		EFB2_04297	0.19	-0.8
4,518,823	-		EFB2_04297	0.19	+0.7
4,519,027	+		EFB2_04297	0.72	-1.1
4,519,027	+		EFB2_04297	0.72	+2.7
4,519,027	+		EFB2_04297	0.72	-1.1
4,519,028	-		EFB2_04297	0.72	-2.1
4,519,050	+		EFB2_04297	0.78	+0.3
4,519,051	-		EFB2_04297	0.78	+6.1
4,519,090	+		EFB2_04297	0.88	+1.0
4,519,090	+		EFB2_04297	0.88	+3.8
4,519,113	+				+0.1
4,519,113	+				-1.2
4,519,113	+				+0.9
4,519,113	+				-0.6
4,519,113	+				+3.1
4,519,113	+				-0.1
4,519,114	-				-1.4
4,519,114	-				+3.5
4,519,114	-				-0.4
4,519,114	-				-2.3
4,519,114	-				+1.9
4,519,114	-				+1.1
4,519,114	-				-2.7
4,519,117	+				-0.0
4,519,117	+				-0.8
4,519,117	+				-0.3
4,519,117	+				+1.7
4,519,117	+				-1.0
4,519,117	+				+1.2
4,519,117	+				+0.8
4,519,117	+				-1.5
4,519,117	+				-1.6
4,519,117	+				+0.6
4,519,117	+				+1.8
4,519,117	+				+1.9
4,519,117	+				-1.3
4,519,117	+				-0.1
4,519,118	-				-1.8
4,519,118	-				-1.6
4,519,118	-				+0.4
4,519,118	-				-0.0
4,519,118	-				-1.0
4,519,118	-				+0.6
4,519,118	-				+0.6
4,519,118	-				+0.6
4,519,118	-				-1.4
4,519,118	-				+0.2
4,519,128	+				+0.1
4,519,128	+				+0.2
4,519,128	+				+3.0
4,519,128	+				-0.6
4,519,128	+				+4.8
4,519,129	-				+0.4
4,519,129	-				+5.3
4,519,129	-				-1.8
4,519,129	-				+2.0
4,519,151	+				+0.6
4,519,152	-				+0.7
4,519,152	-				+4.3
4,519,154	+				+2.0
4,519,154	+				-1.5
4,519,154	+				+0.5
4,519,154	+				-0.6
4,519,155	-				+2.4
4,519,237	+				+3.6
4,519,237	+				-2.1
4,519,237	+				-0.4
4,519,237	+				-2.2
4,519,237	+				-0.3
4,519,237	+				+0.0
4,519,237	+				-1.7
4,519,237	+				-1.4
4,519,237	+				+0.9
4,519,237	+				+2.0
4,519,237	+				+0.6
4,519,237	+				+0.9
4,519,237	+				-1.8
4,519,237	+				+3.0
4,519,237	+				-2.1
4,519,237	+				-0.4
4,519,237	+				-1.2
4,519,237	+				+0.9
4,519,237	+				-0.7
4,519,237	+				-0.0
4,519,237	+				+4.1
4,519,237	+				+0.3
4,519,237	+				+0.6
4,519,237	+				-1.1
4,519,237	+				+1.2
4,519,237	+				-2.2
4,519,237	+				+1.2
4,519,237	+				+0.2
4,519,237	+				+3.4
4,519,237	+				-0.8
4,519,237	+				-0.2
4,519,237	+				-1.4
4,519,237	+				-1.4
4,519,237	+				-0.6
4,519,237	+				+1.1
4,519,237	+				+0.5
4,519,237	+				-1.1
4,519,237	+				+2.6
4,519,237	+				-2.9
4,519,237	+				-0.4
4,519,237	+				+1.6
4,519,237	+				+2.8
4,519,237	+				-1.7
4,519,237	+				+0.3
4,519,237	+				-1.1
4,519,237	+				-0.9
4,519,237	+				+4.5
4,519,237	+				-1.9
4,519,237	+				-1.2
4,519,237	+				+1.0
4,519,237	+				+4.6
4,519,237	+				-0.8
4,519,237	+				+2.1
4,519,237	+				+0.9
4,519,237	+				+2.7
4,519,238	-				+2.2
4,519,238	-				-2.2
4,519,238	-				-1.5
4,519,238	-				+0.9
4,519,238	-				-1.0
4,519,238	-				-1.8
4,519,238	-				+0.2
4,519,238	-				-2.5
4,519,238	-				+0.6
4,519,238	-				-1.4
4,519,238	-				-0.6
4,519,238	-				-1.1
4,519,238	-				-0.7
4,519,238	-				+0.9
4,519,238	-				-1.2
4,519,238	-				-2.3
4,519,238	-				+2.9
4,519,238	-				-2.9
4,519,238	-				-2.9
4,519,238	-				-0.1
4,519,238	-				-2.9
4,519,238	-				-0.9
4,519,238	-				-1.1
4,519,238	-				-1.4
4,519,238	-				+2.9
4,519,238	-				+1.2
4,519,238	-				-1.0
4,519,238	-				-1.6
4,519,238	-				-0.1
4,519,238	-				+0.6
4,519,238	-				+0.6
4,519,238	-				+0.7
4,519,238	-				+1.3
4,519,238	-				-0.4
4,519,238	-				+3.9
4,519,238	-				+3.1
4,519,238	-				-0.7
4,519,238	-				-1.6
4,519,238	-				+2.6
4,519,238	-				+1.9
4,519,238	-				-1.9
4,519,238	-				+1.1
4,519,238	-				-1.2
4,519,238	-				+1.6
4,519,238	-				-0.1
4,519,238	-				+1.7
4,519,238	-				-1.3
4,519,238	-				+1.2
4,519,238	-				-0.4
4,519,238	-				-3.2
4,519,238	-				-1.9
4,519,238	-				+1.8
4,519,239	+				-2.7
4,519,239	+				-2.7
4,519,239	+				-2.2
4,519,239	+				-2.0
4,519,239	+				-2.3
4,519,239	+				+1.7
4,519,239	+				-2.6
4,519,239	+				-1.4
4,519,239	+				-1.8
4,519,239	+				+0.9
4,519,239	+				+1.4
4,519,239	+				-1.2
4,519,239	+				-0.2
4,519,240	-				+0.5
4,519,240	-				-1.0
4,519,240	-				-0.8
4,519,240	-				+1.9
4,519,240	-				-1.5
4,519,240	-				-0.6
4,519,240	-				-0.8
4,519,240	-				-1.1
4,519,240	-				-2.1
4,519,240	-				-0.0
4,519,240	-				-0.2
4,519,240	-				-1.0
4,519,240	-				-0.6
4,519,240	-				+0.9
4,519,240	-				-1.2
4,519,242	+				+4.6
4,519,242	+				-2.0
4,519,242	+				-2.8
4,519,243	-				-0.9
4,519,243	-				-1.4
4,519,243	-				+0.1
4,519,243	-				+1.1
4,519,243	-				+1.2
4,519,243	-				+3.0
4,519,243	-				-0.1
4,519,257	+				+1.9
4,519,278	+				-1.3
4,519,278	+				-1.8
4,519,279	-				-1.6
4,519,279	-				+1.1
4,519,290	+				+1.1
4,519,290	+				+0.4
4,519,290	+				+1.4
4,519,290	+				-1.3
4,519,290	+				+5.1
4,519,290	+				+0.8
4,519,290	+				-1.9
4,519,290	+				-1.8
4,519,290	+				+0.5
4,519,290	+				-0.0
4,519,290	+				-1.8
4,519,290	+				-1.8
4,519,290	+				-0.8
4,519,291	-				-1.0
4,519,291	-				+1.4
4,519,291	-				-0.8
4,519,291	-				+0.8
4,519,291	-				-1.0
4,519,291	-				-2.2
4,519,291	-				+1.3
4,519,291	-				+0.6
4,519,291	-				-1.1
4,519,291	-				+2.5
4,519,291	-				-0.1
4,519,291	-				-0.9
4,519,291	-				-2.6
4,519,291	-				-0.9
4,519,291	-				+3.3
4,519,291	-				+3.6
4,519,291	-				-0.9
4,519,297	+				+2.1
4,519,297	+				-1.7
4,519,298	-				-0.3
4,519,298	-				+0.6
4,519,302	+				+1.6
4,519,302	+				-1.6
4,519,303	-				+3.0
4,519,303	-				+1.9
4,519,303	-				+0.8
4,519,303	-				+0.1
4,519,303	-				+2.1
4,519,379	+		EFB2_04298	0.14	-1.7
4,519,379	+		EFB2_04298	0.14	-0.9
4,519,380	-		EFB2_04298	0.14	-2.5
4,519,380	-		EFB2_04298	0.14	-0.9
4,519,380	-		EFB2_04298	0.14	+1.8
4,519,380	-		EFB2_04298	0.14	+1.7
4,519,380	-		EFB2_04298	0.14	+2.9
4,519,380	-		EFB2_04298	0.14	-2.2
4,519,468	+		EFB2_04298	0.21	-0.9
4,519,468	+		EFB2_04298	0.21	+1.6
4,519,469	-		EFB2_04298	0.21	+1.8
4,519,469	-		EFB2_04298	0.21	+0.9
4,519,469	-		EFB2_04298	0.21	-3.8
4,519,469	-		EFB2_04298	0.21	+1.0
4,519,547	+		EFB2_04298	0.26	-1.7
4,519,547	+		EFB2_04298	0.26	-1.9
4,519,547	+		EFB2_04298	0.26	+0.0
4,519,547	+		EFB2_04298	0.26	-1.7
4,519,547	+		EFB2_04298	0.26	+0.1
4,519,547	+		EFB2_04298	0.26	+1.1
4,519,548	-		EFB2_04298	0.27	+1.1
4,519,548	-		EFB2_04298	0.27	+3.3
4,519,548	-		EFB2_04298	0.27	+1.0
4,519,548	-		EFB2_04298	0.27	+0.8
4,519,548	-		EFB2_04298	0.27	+1.4
4,519,632	+		EFB2_04298	0.33	-0.8
4,519,632	+		EFB2_04298	0.33	-0.7
4,519,632	+		EFB2_04298	0.33	-2.2
4,519,632	+		EFB2_04298	0.33	-2.4
4,519,632	+		EFB2_04298	0.33	+1.4
4,519,632	+		EFB2_04298	0.33	+1.2
4,519,632	+		EFB2_04298	0.33	+0.4
4,519,632	+		EFB2_04298	0.33	+1.0
4,519,632	+		EFB2_04298	0.33	-1.4
4,519,632	+		EFB2_04298	0.33	-2.7
4,519,633	-		EFB2_04298	0.33	+1.2
4,519,633	-		EFB2_04298	0.33	-2.1
4,519,633	-		EFB2_04298	0.33	-3.2
4,519,633	-		EFB2_04298	0.33	-2.7
4,519,633	-		EFB2_04298	0.33	-0.6
4,519,633	-		EFB2_04298	0.33	-0.8
4,519,633	-		EFB2_04298	0.33	+0.8
4,519,633	-		EFB2_04298	0.33	+3.6
4,519,633	-		EFB2_04298	0.33	-0.9
4,519,633	-		EFB2_04298	0.33	-2.0
4,519,633	-		EFB2_04298	0.33	-1.2
4,519,633	-		EFB2_04298	0.33	+0.5
4,519,728	+		EFB2_04298	0.40	+4.9
4,519,729	-		EFB2_04298	0.40	+0.7
4,519,729	-		EFB2_04298	0.40	-1.1
4,519,729	-		EFB2_04298	0.40	-0.3
4,519,734	-		EFB2_04298	0.40	+2.5
4,519,821	+		EFB2_04298	0.47	+1.5
4,519,821	+		EFB2_04298	0.47	-0.3
4,519,822	-		EFB2_04298	0.47	-0.5
4,519,854	+		EFB2_04298	0.49	+1.4
4,519,854	+		EFB2_04298	0.49	-0.9
4,519,894	+		EFB2_04298	0.52	-0.7
4,519,894	+		EFB2_04298	0.52	+1.1
4,519,894	+		EFB2_04298	0.52	+3.3
4,519,895	-		EFB2_04298	0.52	-1.4
4,519,895	-		EFB2_04298	0.52	-1.3
4,519,895	-		EFB2_04298	0.52	+3.0
4,519,895	-		EFB2_04298	0.52	-0.4
4,519,895	-		EFB2_04298	0.52	-1.1
4,519,895	-		EFB2_04298	0.52	+4.8
4,519,922	+		EFB2_04298	0.54	+2.4
4,519,922	+		EFB2_04298	0.54	+1.4
4,519,922	+		EFB2_04298	0.54	+1.6
4,519,922	+		EFB2_04298	0.54	+1.6
4,519,922	+		EFB2_04298	0.54	+1.3
4,519,923	-		EFB2_04298	0.54	+1.4
4,519,923	-		EFB2_04298	0.54	-1.2
4,519,923	-		EFB2_04298	0.54	-1.2
4,519,923	-		EFB2_04298	0.54	+0.8
4,519,928	+		EFB2_04298	0.55	+0.6
4,519,928	+		EFB2_04298	0.55	+3.6
4,519,928	+		EFB2_04298	0.55	-1.2
4,519,928	+		EFB2_04298	0.55	-0.7
4,519,928	+		EFB2_04298	0.55	+1.6
4,519,929	-		EFB2_04298	0.55	+1.9
4,519,929	-		EFB2_04298	0.55	-2.0
4,519,964	-		EFB2_04298	0.57	-0.3
4,519,964	-		EFB2_04298	0.57	+5.3
4,519,964	-		EFB2_04298	0.57	-0.6
4,519,964	-		EFB2_04298	0.57	-2.0
4,519,989	+		EFB2_04298	0.59	+1.1
4,519,990	-		EFB2_04298	0.59	-2.2
4,519,990	-		EFB2_04298	0.59	-3.0
4,519,990	-		EFB2_04298	0.59	+1.6
4,519,990	-		EFB2_04298	0.59	+1.9
4,519,997	+		EFB2_04298	0.60	-0.5
4,520,042	+		EFB2_04298	0.63	+5.2
4,520,042	+		EFB2_04298	0.63	+2.7
4,520,042	+		EFB2_04298	0.63	+0.4
4,520,043	-		EFB2_04298	0.63	+7.6
4,520,043	-		EFB2_04298	0.63	-1.6
4,520,043	-		EFB2_04298	0.63	+2.5
4,520,052	+		EFB2_04298	0.64	+0.5
4,520,059	-		EFB2_04298	0.64	-1.1
4,520,070	+		EFB2_04298	0.65	-1.8
4,520,071	-		EFB2_04298	0.65	-0.4