Strain Fitness in Escherichia fergusonii Becca around EFB2_02410

Experiment: BHIS_CaCl2 no phage control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control
2,549,616	+		EFB2_02408	0.13	+0.9
2,549,616	+		EFB2_02408	0.13	-1.1
2,549,616	+		EFB2_02408	0.13	+0.5
2,549,616	+		EFB2_02408	0.13	+1.9
2,549,617	-		EFB2_02408	0.13	-1.0
2,549,617	-		EFB2_02408	0.13	-0.9
2,549,617	-		EFB2_02408	0.13	-0.7
2,549,617	-		EFB2_02408	0.13	-0.2
2,549,617	-		EFB2_02408	0.13	+0.5
2,549,617	-		EFB2_02408	0.13	-0.6
2,549,617	-		EFB2_02408	0.13	-0.6
2,549,617	-		EFB2_02408	0.13	+1.2
2,549,617	-		EFB2_02408	0.13	+0.7
2,549,617	-		EFB2_02408	0.13	+0.3
2,549,617	-		EFB2_02408	0.13	-0.6
2,549,617	-		EFB2_02408	0.13	+0.4
2,549,617	-		EFB2_02408	0.13	-1.3
2,549,617	-		EFB2_02408	0.13	-0.7
2,549,617	-		EFB2_02408	0.13	+1.2
2,549,617	-		EFB2_02408	0.13	-0.7
2,549,617	-		EFB2_02408	0.13	-0.7
2,549,617	-		EFB2_02408	0.13	-0.3
2,549,617	-		EFB2_02408	0.13	+0.5
2,549,617	-		EFB2_02408	0.13	+0.9
2,549,617	-		EFB2_02408	0.13	-1.8
2,549,634	+		EFB2_02408	0.16	+0.7
2,549,635	-		EFB2_02408	0.16	+2.5
2,549,635	-		EFB2_02408	0.16	-2.1
2,549,650	-		EFB2_02408	0.19	-0.5
2,549,650	-		EFB2_02408	0.19	-0.5
2,549,650	-		EFB2_02408	0.19	+5.2
2,549,650	-		EFB2_02408	0.19	-1.0
2,549,650	-		EFB2_02408	0.19	-1.7
2,549,685	+		EFB2_02408	0.25	+0.7
2,549,731	-		EFB2_02408	0.33	-1.2
2,549,744	+		EFB2_02408	0.35	-1.3
2,549,744	+		EFB2_02408	0.35	+0.8
2,549,744	+		EFB2_02408	0.35	+0.2
2,549,745	-		EFB2_02408	0.36	-0.5
2,549,751	+		EFB2_02408	0.37	+1.2
2,549,751	+		EFB2_02408	0.37	+0.5
2,549,751	+		EFB2_02408	0.37	-0.1
2,549,752	-		EFB2_02408	0.37	+1.9
2,549,752	-		EFB2_02408	0.37	-0.4
2,549,752	-		EFB2_02408	0.37	-2.8
2,549,752	-		EFB2_02408	0.37	+3.5
2,549,752	-		EFB2_02408	0.37	-1.4
2,549,753	+		EFB2_02408	0.37	+1.9
2,549,754	-		EFB2_02408	0.37	-0.4
2,549,754	-		EFB2_02408	0.37	+0.0
2,549,754	-		EFB2_02408	0.37	+0.0
2,549,754	-		EFB2_02408	0.37	+3.7
2,549,754	-		EFB2_02408	0.37	-1.4
2,549,754	-		EFB2_02408	0.37	+2.2
2,549,754	-		EFB2_02408	0.37	-2.0
2,549,754	-		EFB2_02408	0.37	-0.8
2,549,789	-		EFB2_02408	0.43	+0.9
2,549,789	-		EFB2_02408	0.43	+0.5
2,549,825	+		EFB2_02408	0.50	+0.2
2,549,826	-		EFB2_02408	0.50	+0.5
2,549,826	-		EFB2_02408	0.50	-0.5
2,549,826	-		EFB2_02408	0.50	+1.6
2,549,838	+		EFB2_02408	0.52	+3.9
2,549,838	+		EFB2_02408	0.52	-0.3
2,549,839	-		EFB2_02408	0.52	-0.4
2,549,839	-		EFB2_02408	0.52	-1.0
2,549,839	-		EFB2_02408	0.52	+1.5
2,549,839	-		EFB2_02408	0.52	-1.2
2,549,839	-		EFB2_02408	0.52	-1.9
2,549,839	-		EFB2_02408	0.52	+0.0
2,549,839	-		EFB2_02408	0.52	+3.5
2,549,843	-		EFB2_02408	0.53	+1.2
2,549,843	-		EFB2_02408	0.53	+0.5
2,549,843	-		EFB2_02408	0.53	+0.3
2,549,843	-		EFB2_02408	0.53	+0.0
2,549,875	-		EFB2_02408	0.59	+0.3
2,549,952	+		EFB2_02408	0.73	+0.9
2,549,953	-		EFB2_02408	0.73	-1.0
2,549,953	-		EFB2_02408	0.73	+0.2
2,549,953	-		EFB2_02408	0.73	-0.3
2,549,958	+		EFB2_02408	0.74	+3.5
2,549,959	-		EFB2_02408	0.74	+0.6
2,549,959	-		EFB2_02408	0.74	-1.2
2,549,959	-		EFB2_02408	0.74	-0.5
2,549,959	-		EFB2_02408	0.74	+3.2
2,549,959	-		EFB2_02408	0.74	-0.7
2,549,959	-		EFB2_02408	0.74	-1.6
2,549,959	-		EFB2_02408	0.74	-1.8
2,549,959	-		EFB2_02408	0.74	-0.3
2,549,964	-		EFB2_02408	0.75	-0.4
2,549,964	-		EFB2_02408	0.75	-2.2
2,549,964	-		EFB2_02408	0.75	-1.6
2,549,964	-		EFB2_02408	0.75	+0.7
2,549,993	+		EFB2_02408	0.80	+3.5
2,549,994	-		EFB2_02408	0.80	+2.7
2,549,994	-		EFB2_02408	0.80	+1.9
2,549,994	-		EFB2_02408	0.80	+0.5
2,550,031	-		EFB2_02408	0.87	-2.3
2,550,046	+		EFB2_02408	0.89	+0.5
2,550,047	-		EFB2_02408	0.89	+1.2
2,550,047	-		EFB2_02408	0.89	-1.2
2,550,047	-		EFB2_02408	0.89	+4.2
2,550,047	-		EFB2_02408	0.89	+1.6
2,550,047	-		EFB2_02408	0.89	+2.0
2,550,047	-		EFB2_02408	0.89	+0.3
2,550,047	-		EFB2_02408	0.89	+1.5
2,550,047	-		EFB2_02408	0.89	-2.1
2,550,047	-		EFB2_02408	0.89	-1.0
2,550,047	-		EFB2_02408	0.89	+0.2
2,550,047	-		EFB2_02408	0.89	+0.0
2,550,047	-		EFB2_02408	0.89	+0.3
2,550,047	-		EFB2_02408	0.89	+1.6
2,550,047	-		EFB2_02408	0.89	+0.2
2,550,047	-		EFB2_02408	0.89	+3.1
2,550,050	+				+0.7
2,550,050	+				+0.7
2,550,050	+				-0.4
2,550,050	+				-0.3
2,550,050	+				+0.7
2,550,051	-				+1.2
2,550,051	-				+1.5
2,550,051	-				-1.0
2,550,051	-				-1.4
2,550,056	-				-1.3
2,550,056	-				+0.9
2,550,056	-				+0.2
2,550,056	-				-0.2
2,550,056	-				+0.5
2,550,056	-				-1.9
2,550,056	-				-0.2
2,550,080	-				+0.0
2,550,080	-				+0.7
2,550,085	-				-1.6
2,550,085	-				-0.7
2,550,085	-				-1.4
2,550,085	-				+2.3
2,550,085	-				+0.5
2,550,085	-				+1.6
2,550,116	+				-0.2
2,550,116	+				-0.4
2,550,116	+				+0.7
2,550,116	+				+0.5
2,550,116	+				+1.5
2,550,117	-				-1.1
2,550,117	-				-0.8
2,550,117	-				+0.6
2,550,117	-				-1.1
2,550,117	-				+0.9
2,550,117	-				-1.8
2,550,117	-				-2.4
2,550,117	-				+0.9
2,550,126	-				+0.3
2,550,151	+				+1.9
2,550,187	+		EFB2_02409	0.14	-1.1
2,550,187	+		EFB2_02409	0.14	+0.5
2,550,188	-		EFB2_02409	0.14	+2.8
2,550,188	-		EFB2_02409	0.14	-0.5
2,550,188	-		EFB2_02409	0.14	+2.1
2,550,202	-		EFB2_02409	0.18	-0.9
2,550,232	+		EFB2_02409	0.27	-0.5
2,550,263	-		EFB2_02409	0.36	-0.9
2,550,308	-		EFB2_02409	0.49	+0.0
2,550,481	+				+5.3
2,550,495	+				+1.9
2,550,495	+				+0.9
2,550,496	-				+4.1
2,550,496	-				+2.4
2,550,496	-				+0.0
2,550,496	-				-2.1
2,550,496	-				-1.5
2,550,496	-				-2.3
2,550,496	-				-1.0
2,550,496	-				+1.6
2,550,496	-				+3.4
2,550,496	-				+0.7
2,550,496	-				+3.2
2,550,496	-				+2.5
2,550,505	+				-0.7
2,550,505	+				+0.5
2,550,505	+				-0.3
2,550,505	+				+0.9
2,550,506	-				+0.8
2,550,506	-				+0.5
2,550,506	-				-1.4
2,550,517	+				+0.7
2,550,517	+				-0.7
2,550,517	+				-0.1
2,550,517	+				+1.7
2,550,518	-				+0.1
2,550,518	-				+1.0
2,550,518	-				+2.5
2,550,518	-				-1.7
2,550,518	-				-1.3
2,550,518	-				+4.6
2,550,518	-				-0.7
2,550,518	-				+1.9
2,550,518	-				+4.5
2,550,518	-				+3.3
2,550,518	-				+3.0
2,550,559	+				-1.0
2,550,559	+				+0.1
2,550,559	+				+1.4
2,550,559	+				+3.5
2,550,559	+				-0.0
2,550,559	+				-0.9
2,550,559	+				-0.1
2,550,559	+				-0.1
2,550,559	+				-0.5
2,550,559	+				-0.7
2,550,559	+				-0.7
2,550,559	+				-0.5
2,550,559	+				-1.6
2,550,559	+				+1.9
2,550,559	+				+3.5
2,550,559	+				+1.2
2,550,559	+				+1.8
2,550,560	-				-0.5
2,550,560	-				+0.0
2,550,560	-				+3.2
2,550,560	-				-0.7
2,550,560	-				-0.1
2,550,560	-				+1.2
2,550,560	-				-1.4
2,550,560	-				+0.6
2,550,561	+				+2.5
2,550,561	+				-1.1
2,550,561	+				-0.8
2,550,561	+				-1.9
2,550,561	+				-0.2
2,550,561	+				+0.0
2,550,562	-				+2.5
2,550,562	-				-0.4
2,550,562	-				+0.0
2,550,562	-				-0.3
2,550,562	-				-0.2
2,550,570	+				-1.0
2,550,570	+				-2.4
2,550,570	+				-1.5
2,550,570	+				+1.5
2,550,570	+				+4.6
2,550,570	+				-0.2
2,550,571	-				+1.9
2,550,571	-				-1.8
2,550,571	-				+5.4
2,550,571	-				+1.6
2,550,571	-				+0.0
2,550,571	-				-0.1
2,550,571	-				-2.7
2,550,571	-				-1.1
2,550,571	-				-1.1
2,550,571	-				+0.7
2,550,571	-				+0.9
2,550,573	+				-0.8
2,550,573	+				+0.9
2,550,573	+				+3.5
2,550,573	+				+2.5
2,550,573	+				+0.5
2,550,573	+				-1.2
2,550,573	+				-0.3
2,550,573	+				+6.2
2,550,573	+				-0.7
2,550,573	+				+2.0
2,550,573	+				+1.9
2,550,574	-				-0.5
2,550,574	-				+2.1
2,550,574	-				-0.7
2,550,574	-				-0.9
2,550,574	-				+6.2
2,550,574	-				-0.7
2,550,574	-				+2.2
2,550,574	-				+4.5
2,550,574	-				+2.5
2,550,574	-				+0.8
2,550,574	-				+1.2
2,550,574	-				+1.5
2,550,574	-				+0.9
2,550,574	-				-0.0
2,550,583	+				-0.7
2,550,583	+				-0.5
2,550,584	-				+1.7
2,550,584	-				-2.0
2,550,584	-				-0.8
2,550,585	+				+2.0
2,550,585	+				-1.3
2,550,585	+				-1.2
2,550,585	+				+0.3
2,550,585	+				-1.2
2,550,585	+				+2.1
2,550,585	+				+1.2
2,550,585	+				+2.7
2,550,585	+				-0.9
2,550,585	+				-0.1
2,550,585	+				-0.4
2,550,586	-				-1.9
2,550,586	-				-0.1
2,550,586	-				-1.5
2,550,586	-				-0.4
2,550,589	+				-2.8
2,550,589	+				-0.1
2,550,589	+				-2.3
2,550,589	+				-1.2
2,550,589	+				-1.2
2,550,589	+				+0.9
2,550,589	+				+1.4
2,550,589	+				+3.1
2,550,589	+				-1.0
2,550,589	+				-1.0
2,550,589	+				-2.1
2,550,589	+				+0.2
2,550,589	+				+0.2
2,550,589	+				-2.4
2,550,589	+				+0.2
2,550,589	+				+1.2
2,550,590	-				+0.3
2,550,590	-				-0.9
2,550,590	-				+0.9
2,550,590	-				-0.9
2,550,590	-				+0.3
2,550,590	-				+1.0
2,550,590	-				+2.6
2,550,590	-				-1.4
2,550,590	-				+4.6
2,550,590	-				+3.9
2,550,590	-				+7.5
2,550,590	-				-1.0
2,550,590	-				-1.2
2,550,590	-				+0.5
2,550,591	+				+2.5
2,550,591	+				-1.7
2,550,591	+				-1.1
2,550,591	+				+5.5
2,550,591	+				+1.0
2,550,591	+				-1.5
2,550,591	+				+0.3
2,550,591	+				+1.2
2,550,591	+				-1.7
2,550,591	+				+0.9
2,550,591	+				+2.5
2,550,591	+				+0.3
2,550,591	+				+1.8
2,550,591	+				-1.5
2,550,591	+				+2.2
2,550,591	+				+0.7
2,550,592	-				-1.6
2,550,592	-				-1.0
2,550,592	-				+4.3
2,550,592	-				-1.6
2,550,592	-				+1.4
2,550,592	-				+0.5
2,550,592	-				-0.2
2,550,592	-				+1.2
2,550,592	-				+3.2
2,550,592	-				-0.4
2,550,592	-				+0.2
2,550,592	-				+0.9
2,550,592	-				-0.1
2,550,604	+				+4.3
2,550,604	+				-1.6
2,550,604	+				-2.0
2,550,604	+				+4.7
2,550,605	-				+1.2
2,550,605	-				+1.9
2,550,605	-				+1.4
2,550,605	-				-1.4
2,550,605	-				-0.3
2,550,605	-				+3.4
2,550,621	+				+0.0
2,550,622	-				+2.7
2,550,622	-				-0.3
2,550,622	-				+1.0
2,550,632	+				-0.9
2,550,632	+				+1.9
2,550,632	+				+0.2
2,550,636	-				-0.2
2,550,646	-				-1.5
2,550,663	+		EFB2_02410	0.14	+0.3
2,550,708	+		EFB2_02410	0.28	+7.0
2,550,708	+		EFB2_02410	0.28	-1.3
2,550,709	-		EFB2_02410	0.28	-0.4
2,550,761	+		EFB2_02410	0.44	-0.1
2,550,802	+		EFB2_02410	0.57	-0.1
2,550,802	+		EFB2_02410	0.57	-1.2
2,550,802	+		EFB2_02410	0.57	+1.2
2,550,803	-		EFB2_02410	0.57	-0.8
2,550,803	-		EFB2_02410	0.57	-0.8
2,550,803	-		EFB2_02410	0.57	-1.3
2,550,814	+		EFB2_02410	0.61	-0.7
2,550,814	+		EFB2_02410	0.61	-0.3
2,550,814	+		EFB2_02410	0.61	-0.2
2,550,814	+		EFB2_02410	0.61	-0.2
2,550,815	-		EFB2_02410	0.61	+1.9
2,550,871	+		EFB2_02410	0.78	-0.9
2,550,871	+		EFB2_02410	0.78	+3.9
2,550,871	+		EFB2_02410	0.78	+1.4
2,550,890	+		EFB2_02410	0.84	+0.3
2,550,890	+		EFB2_02410	0.84	+3.2
2,550,998	-				-0.2
2,551,036	+				-0.4
2,551,037	-				+1.5
2,551,038	+				+0.9
2,551,039	-				-0.8
2,551,087	-				+6.6
2,551,159	-				-1.2
2,551,159	-				-0.8
2,551,178	-				+0.3
2,551,192	+				-1.2
2,551,206	+				+3.8
2,551,206	+				+2.4
2,551,228	+				+2.3
2,551,228	+				+1.0
2,551,229	-				+3.8
2,551,231	+				+0.2
2,551,254	+				-1.1
2,551,254	+				+0.2
2,551,254	+				-0.1
2,551,255	-				+6.3
2,551,255	-				-1.7
2,551,283	+		EFB2_02411	0.11	-0.3
2,551,283	+		EFB2_02411	0.11	-1.2
2,551,284	-		EFB2_02411	0.11	+0.7
2,551,284	-		EFB2_02411	0.11	-0.8
2,551,313	-		EFB2_02411	0.14	-1.4
2,551,337	+		EFB2_02411	0.16	+1.5
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