Strain Fitness in Escherichia fergusonii Becca around EFB2_01143

Experiment: BHIS_CaCl2 no phage control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control
1,199,038	+		EFB2_01142	0.37	-0.8
1,199,038	+		EFB2_01142	0.37	-1.3
1,199,038	+		EFB2_01142	0.37	+1.0
1,199,039	-		EFB2_01142	0.37	-1.3
1,199,039	-		EFB2_01142	0.37	-0.4
1,199,039	-		EFB2_01142	0.37	-1.2
1,199,039	-		EFB2_01142	0.37	-1.5
1,199,039	-		EFB2_01142	0.37	-1.3
1,199,039	-		EFB2_01142	0.37	-1.0
1,199,039	-		EFB2_01142	0.37	+2.3
1,199,039	-		EFB2_01142	0.37	-1.8
1,199,117	+		EFB2_01142	0.42	+0.4
1,199,117	+		EFB2_01142	0.42	-1.4
1,199,129	+		EFB2_01142	0.43	+3.8
1,199,179	-		EFB2_01142	0.46	+0.0
1,199,187	+		EFB2_01142	0.47	-1.4
1,199,187	+		EFB2_01142	0.47	+0.4
1,199,187	+		EFB2_01142	0.47	-1.6
1,199,187	+		EFB2_01142	0.47	+2.8
1,199,187	+		EFB2_01142	0.47	-1.1
1,199,187	+		EFB2_01142	0.47	+0.1
1,199,188	-		EFB2_01142	0.47	-2.5
1,199,188	-		EFB2_01142	0.47	+1.8
1,199,188	-		EFB2_01142	0.47	-2.4
1,199,188	-		EFB2_01142	0.47	-0.7
1,199,188	-		EFB2_01142	0.47	-0.3
1,199,207	-		EFB2_01142	0.48	-2.5
1,199,207	-		EFB2_01142	0.48	-1.1
1,199,207	-		EFB2_01142	0.48	+5.8
1,199,215	+		EFB2_01142	0.49	+0.8
1,199,215	+		EFB2_01142	0.49	-1.3
1,199,215	+		EFB2_01142	0.49	+2.0
1,199,215	+		EFB2_01142	0.49	-0.2
1,199,215	+		EFB2_01142	0.49	-1.9
1,199,215	+		EFB2_01142	0.49	-1.4
1,199,215	+		EFB2_01142	0.49	+0.8
1,199,215	+		EFB2_01142	0.49	-0.6
1,199,215	+		EFB2_01142	0.49	-1.4
1,199,216	-		EFB2_01142	0.49	+2.2
1,199,275	+		EFB2_01142	0.53	-1.2
1,199,277	+		EFB2_01142	0.53	+3.8
1,199,277	+		EFB2_01142	0.53	-1.7
1,199,277	+		EFB2_01142	0.53	+1.5
1,199,277	+		EFB2_01142	0.53	+0.1
1,199,277	+		EFB2_01142	0.53	-1.1
1,199,277	+		EFB2_01142	0.53	-0.6
1,199,277	+		EFB2_01142	0.53	-1.9
1,199,277	+		EFB2_01142	0.53	-1.4
1,199,277	+		EFB2_01142	0.53	-1.5
1,199,278	-		EFB2_01142	0.53	-0.7
1,199,278	-		EFB2_01142	0.53	+0.4
1,199,278	-		EFB2_01142	0.53	-0.7
1,199,278	-		EFB2_01142	0.53	+4.3
1,199,278	-		EFB2_01142	0.53	-0.6
1,199,278	-		EFB2_01142	0.53	-0.4
1,199,278	-		EFB2_01142	0.53	+2.3
1,199,278	-		EFB2_01142	0.53	-0.2
1,199,278	-		EFB2_01142	0.53	+0.3
1,199,336	+		EFB2_01142	0.57	-1.1
1,199,337	-		EFB2_01142	0.57	+0.5
1,199,344	+		EFB2_01142	0.58	-2.0
1,199,345	-		EFB2_01142	0.58	-2.6
1,199,345	-		EFB2_01142	0.58	+1.3
1,199,345	-		EFB2_01142	0.58	-1.2
1,199,356	+		EFB2_01142	0.58	-0.7
1,199,356	+		EFB2_01142	0.58	-0.6
1,199,357	-		EFB2_01142	0.58	-0.2
1,199,357	-		EFB2_01142	0.58	-0.7
1,199,357	-		EFB2_01142	0.58	-2.1
1,199,357	-		EFB2_01142	0.58	+4.6
1,199,413	+		EFB2_01142	0.62	-1.3
1,199,413	+		EFB2_01142	0.62	+1.5
1,199,413	+		EFB2_01142	0.62	+2.5
1,199,414	-		EFB2_01142	0.62	+0.7
1,199,470	+		EFB2_01142	0.66	+3.4
1,199,470	+		EFB2_01142	0.66	+3.1
1,199,471	-		EFB2_01142	0.66	+1.2
1,199,471	-		EFB2_01142	0.66	-0.2
1,199,471	-		EFB2_01142	0.66	+0.5
1,199,515	+		EFB2_01142	0.69	+1.1
1,199,515	+		EFB2_01142	0.69	-1.1
1,199,515	+		EFB2_01142	0.69	-1.3
1,199,515	+		EFB2_01142	0.69	+0.8
1,199,515	+		EFB2_01142	0.69	+2.4
1,199,515	+		EFB2_01142	0.69	+0.4
1,199,515	+		EFB2_01142	0.69	-0.3
1,199,515	+		EFB2_01142	0.69	-2.3
1,199,515	+		EFB2_01142	0.69	-0.9
1,199,515	+		EFB2_01142	0.69	+3.0
1,199,516	-		EFB2_01142	0.69	-1.2
1,199,516	-		EFB2_01142	0.69	-2.1
1,199,516	-		EFB2_01142	0.69	-0.2
1,199,516	-		EFB2_01142	0.69	-0.3
1,199,516	-		EFB2_01142	0.69	-1.3
1,199,516	-		EFB2_01142	0.69	+2.5
1,199,516	-		EFB2_01142	0.69	-1.4
1,199,516	-		EFB2_01142	0.69	-0.2
1,199,516	-		EFB2_01142	0.69	+0.4
1,199,516	-		EFB2_01142	0.69	-3.2
1,199,516	-		EFB2_01142	0.69	-0.9
1,199,517	+		EFB2_01142	0.69	-2.1
1,199,517	+		EFB2_01142	0.69	+1.1
1,199,517	+		EFB2_01142	0.69	+3.8
1,199,517	+		EFB2_01142	0.69	-1.5
1,199,517	+		EFB2_01142	0.69	-0.9
1,199,518	-		EFB2_01142	0.69	+0.4
1,199,518	-		EFB2_01142	0.69	+1.2
1,199,518	-		EFB2_01142	0.69	-0.5
1,199,518	-		EFB2_01142	0.69	+0.3
1,199,518	-		EFB2_01142	0.69	-0.6
1,199,518	-		EFB2_01142	0.69	-1.8
1,199,518	-		EFB2_01142	0.69	-1.9
1,199,541	+		EFB2_01142	0.71	+2.7
1,199,541	+		EFB2_01142	0.71	+0.7
1,199,541	+		EFB2_01142	0.71	+2.3
1,199,541	+		EFB2_01142	0.71	-1.1
1,199,542	-		EFB2_01142	0.71	-0.5
1,199,542	-		EFB2_01142	0.71	-0.3
1,199,542	-		EFB2_01142	0.71	-1.6
1,199,542	-		EFB2_01142	0.71	-1.8
1,199,542	-		EFB2_01142	0.71	+3.2
1,199,542	-		EFB2_01142	0.71	-2.2
1,199,542	-		EFB2_01142	0.71	+3.1
1,199,552	-		EFB2_01142	0.72	-2.0
1,199,610	+		EFB2_01142	0.76	+0.0
1,199,610	+		EFB2_01142	0.76	-1.1
1,199,611	-		EFB2_01142	0.76	+2.3
1,199,611	-		EFB2_01142	0.76	-1.7
1,199,611	-		EFB2_01142	0.76	-0.1
1,199,611	-		EFB2_01142	0.76	-1.8
1,199,626	+		EFB2_01142	0.77	-0.1
1,199,626	+		EFB2_01142	0.77	+1.5
1,199,626	+		EFB2_01142	0.77	-0.8
1,199,627	-		EFB2_01142	0.77	-0.5
1,199,627	-		EFB2_01142	0.77	+1.9
1,199,627	-		EFB2_01142	0.77	-1.9
1,199,627	-		EFB2_01142	0.77	+3.3
1,199,627	-		EFB2_01142	0.77	+0.1
1,199,627	-		EFB2_01142	0.77	-2.5
1,199,638	-		EFB2_01142	0.77	-1.3
1,199,648	-		EFB2_01142	0.78	+0.9
1,199,648	-		EFB2_01142	0.78	-1.4
1,199,668	+		EFB2_01142	0.79	+3.5
1,199,669	-		EFB2_01142	0.80	-3.4
1,199,669	-		EFB2_01142	0.80	-3.2
1,199,669	-		EFB2_01142	0.80	-0.7
1,199,669	-		EFB2_01142	0.80	+3.5
1,199,689	+		EFB2_01142	0.81	+0.5
1,199,689	+		EFB2_01142	0.81	-2.3
1,199,689	+		EFB2_01142	0.81	-0.7
1,199,749	+		EFB2_01142	0.85	-0.2
1,199,749	+		EFB2_01142	0.85	-0.9
1,199,749	+		EFB2_01142	0.85	+1.3
1,199,749	+		EFB2_01142	0.85	+4.6
1,199,749	+		EFB2_01142	0.85	-1.4
1,199,749	+		EFB2_01142	0.85	+4.0
1,199,749	+		EFB2_01142	0.85	+4.3
1,199,750	-		EFB2_01142	0.85	-2.1
1,199,750	-		EFB2_01142	0.85	-2.1
1,199,750	-		EFB2_01142	0.85	-1.7
1,199,750	-		EFB2_01142	0.85	+1.8
1,199,758	+		EFB2_01142	0.86	+0.0
1,199,758	+		EFB2_01142	0.86	-0.7
1,199,759	-		EFB2_01142	0.86	+1.8
1,199,759	-		EFB2_01142	0.86	+0.1
1,199,801	+		EFB2_01142	0.88	-1.7
1,199,801	+		EFB2_01142	0.88	-0.9
1,199,801	+		EFB2_01142	0.88	-1.7
1,199,801	+		EFB2_01142	0.88	-0.7
1,199,801	+		EFB2_01142	0.88	+0.0
1,199,801	+		EFB2_01142	0.88	+0.7
1,199,801	+		EFB2_01142	0.88	-1.5
1,199,801	+		EFB2_01142	0.88	-1.0
1,199,801	+		EFB2_01142	0.88	+2.8
1,199,801	+		EFB2_01142	0.88	+5.5
1,199,801	+		EFB2_01142	0.88	-0.1
1,199,802	-		EFB2_01142	0.89	+3.6
1,199,802	-		EFB2_01142	0.89	-1.2
1,199,802	-		EFB2_01142	0.89	+1.8
1,199,802	-		EFB2_01142	0.89	-2.2
1,199,802	-		EFB2_01142	0.89	-2.0
1,199,802	-		EFB2_01142	0.89	+0.4
1,199,802	-		EFB2_01142	0.89	-2.3
1,199,802	-		EFB2_01142	0.89	-1.5
1,199,802	-		EFB2_01142	0.89	-0.2
1,199,802	-		EFB2_01142	0.89	-1.8
1,199,802	-		EFB2_01142	0.89	-2.0
1,199,802	-		EFB2_01142	0.89	-1.7
1,199,802	-		EFB2_01142	0.89	+2.1
1,199,802	-		EFB2_01142	0.89	+0.3
1,199,802	-		EFB2_01142	0.89	-1.5
1,199,802	-		EFB2_01142	0.89	-1.5
1,199,802	-		EFB2_01142	0.89	-0.8
1,199,802	-		EFB2_01142	0.89	-2.9
1,199,813	+		EFB2_01142	0.89	+0.3
1,199,813	+		EFB2_01142	0.89	+3.1
1,199,814	-		EFB2_01142	0.89	+2.1
1,199,870	+				+0.1
1,199,871	-				-2.4
1,199,871	-				-0.5
1,199,871	-				+0.8
1,199,871	-				-1.1
1,199,896	+				+0.7
1,199,896	+				-0.7
1,199,896	+				+1.7
1,199,896	+				-1.5
1,199,896	+				+0.5
1,199,896	+				-1.5
1,199,896	+				-2.0
1,199,896	+				-1.6
1,199,896	+				-0.8
1,199,897	-				-1.9
1,199,897	-				-0.7
1,199,897	-				-0.4
1,199,897	-				-0.9
1,199,897	-				-0.2
1,199,897	-				-1.9
1,199,897	-				+0.5
1,199,897	-				+1.5
1,199,897	-				-1.6
1,199,897	-				+1.5
1,199,897	-				-1.7
1,199,910	+				+0.5
1,199,910	+				+1.7
1,199,910	+				+0.0
1,199,910	+				+1.8
1,199,910	+				+1.0
1,199,910	+				-0.1
1,199,910	+				-0.6
1,199,910	+				+0.3
1,199,910	+				+3.4
1,199,910	+				+4.6
1,199,910	+				-2.3
1,199,910	+				+1.2
1,199,910	+				-0.2
1,199,910	+				+4.2
1,199,910	+				-0.5
1,199,910	+				-0.5
1,199,911	-				+3.9
1,199,911	-				-3.1
1,199,911	-				+1.7
1,199,911	-				-0.9
1,199,911	-				+2.5
1,199,911	-				-1.4
1,199,911	-				-1.9
1,199,911	-				-0.7
1,199,911	-				-0.5
1,199,911	-				+3.7
1,199,911	-				+1.5
1,199,911	-				+5.8
1,199,911	-				+1.0
1,199,951	+				+5.5
1,199,951	+				+0.7
1,199,951	+				-1.9
1,199,952	-				+1.7
1,199,958	+				+0.0
1,199,958	+				-1.3
1,199,959	-				+0.5
1,199,959	-				-1.0
1,199,985	+				+2.5
1,199,986	-				+1.9
1,199,999	+				-1.4
1,199,999	+				+2.6
1,199,999	+				-2.2
1,199,999	+				+4.8
1,199,999	+				+1.0
1,199,999	+				+1.2
1,200,000	-				-1.1
1,200,000	-				+0.6
1,200,000	-				-0.3
1,200,000	-				+3.6
1,200,000	-				+5.8
1,200,000	-				+0.7
1,200,000	-				-1.5
1,200,010	-				-3.0
1,200,010	-				+4.7
1,200,063	+				+3.9
1,200,064	-				+0.0
1,200,064	-				-2.5
1,200,116	+				-1.0
1,200,149	+		EFB2_01143	0.12	-1.6
1,200,204	+		EFB2_01143	0.16	+0.5
1,200,204	+		EFB2_01143	0.16	+0.1
1,200,204	+		EFB2_01143	0.16	+5.7
1,200,204	+		EFB2_01143	0.16	-2.9
1,200,204	+		EFB2_01143	0.16	-2.1
1,200,204	+		EFB2_01143	0.16	-0.5
1,200,204	+		EFB2_01143	0.16	+1.0
1,200,204	+		EFB2_01143	0.16	+1.8
1,200,204	+		EFB2_01143	0.16	+1.1
1,200,205	-		EFB2_01143	0.16	-2.3
1,200,205	-		EFB2_01143	0.16	-0.4
1,200,205	-		EFB2_01143	0.16	-0.2
1,200,205	-		EFB2_01143	0.16	+2.2
1,200,205	-		EFB2_01143	0.16	-0.4
1,200,205	-		EFB2_01143	0.16	-0.3
1,200,205	-		EFB2_01143	0.16	+1.2
1,200,205	-		EFB2_01143	0.16	-2.1
1,200,205	-		EFB2_01143	0.16	-1.0
1,200,205	-		EFB2_01143	0.16	-0.5
1,200,208	+		EFB2_01143	0.16	+0.7
1,200,208	+		EFB2_01143	0.16	-1.6
1,200,208	+		EFB2_01143	0.16	+2.5
1,200,209	-		EFB2_01143	0.17	+0.8
1,200,209	-		EFB2_01143	0.17	+1.0
1,200,209	-		EFB2_01143	0.17	-0.6
1,200,209	-		EFB2_01143	0.17	+0.7
1,200,222	+		EFB2_01143	0.18	+3.0
1,200,223	-		EFB2_01143	0.18	-0.8
1,200,223	-		EFB2_01143	0.18	+2.7
1,200,227	+		EFB2_01143	0.18	-3.1
1,200,227	+		EFB2_01143	0.18	-3.2
1,200,227	+		EFB2_01143	0.18	+0.0
1,200,227	+		EFB2_01143	0.18	-0.2
1,200,227	+		EFB2_01143	0.18	-2.3
1,200,227	+		EFB2_01143	0.18	-2.9
1,200,227	+		EFB2_01143	0.18	+1.9
1,200,227	+		EFB2_01143	0.18	+3.0
1,200,227	+		EFB2_01143	0.18	-2.0
1,200,227	+		EFB2_01143	0.18	+1.2
1,200,227	+		EFB2_01143	0.18	+2.2
1,200,227	+		EFB2_01143	0.18	-0.4
1,200,227	+		EFB2_01143	0.18	-2.0
1,200,227	+		EFB2_01143	0.18	-0.3
1,200,228	-		EFB2_01143	0.18	-1.9
1,200,228	-		EFB2_01143	0.18	-2.3
1,200,228	-		EFB2_01143	0.18	+1.1
1,200,228	-		EFB2_01143	0.18	+0.7
1,200,228	-		EFB2_01143	0.18	+1.1
1,200,228	-		EFB2_01143	0.18	-1.9
1,200,228	-		EFB2_01143	0.18	+4.9
1,200,228	-		EFB2_01143	0.18	+1.5
1,200,228	-		EFB2_01143	0.18	+2.1
1,200,228	-		EFB2_01143	0.18	+1.7
1,200,228	-		EFB2_01143	0.18	+0.4
1,200,228	-		EFB2_01143	0.18	+2.7
1,200,263	+		EFB2_01143	0.21	-1.4
1,200,264	-		EFB2_01143	0.21	+4.6
1,200,281	+		EFB2_01143	0.22	-2.1
1,200,281	+		EFB2_01143	0.22	-1.9
1,200,281	+		EFB2_01143	0.22	-1.9
1,200,282	-		EFB2_01143	0.22	-1.1
1,200,339	+		EFB2_01143	0.27	-0.8
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