Experiment: Mixed culture; Pseudomonas DC3000 1:1 with Pseudomonas_SVBP6_ML3 in M9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt COO64_RS21325 and COO64_RS21330 are separated by 445 nucleotides COO64_RS21330 and COO64_RS21335 are separated by 352 nucleotides
COO64_RS21325: COO64_RS21325 - flagellin domain-containing protein, at 22,663 to 23,511
_RS21325
COO64_RS21330: COO64_RS21330 - ketoacyl-ACP synthase III, at 23,957 to 24,886
_RS21330
COO64_RS21335: COO64_RS21335 - glycosyltransferase, at 25,239 to 28,025
_RS21335
Position (kb) 23
24
25 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 23.017 kb on - strand, within COO64_RS21325 at 23.017 kb on - strand, within COO64_RS21325 at 23.184 kb on + strand, within COO64_RS21325 at 23.184 kb on + strand, within COO64_RS21325 at 23.238 kb on + strand, within COO64_RS21325 at 23.238 kb on + strand, within COO64_RS21325 at 23.238 kb on + strand, within COO64_RS21325 at 23.238 kb on + strand, within COO64_RS21325 at 23.239 kb on - strand, within COO64_RS21325 at 23.298 kb on + strand, within COO64_RS21325 at 23.299 kb on - strand, within COO64_RS21325 at 23.299 kb on - strand, within COO64_RS21325 at 23.299 kb on - strand, within COO64_RS21325 at 23.353 kb on - strand, within COO64_RS21325 at 23.353 kb on - strand, within COO64_RS21325 at 23.484 kb on + strand at 23.484 kb on + strand at 23.484 kb on + strand at 23.484 kb on + strand at 23.484 kb on + strand at 23.484 kb on + strand at 23.484 kb on + strand at 23.484 kb on + strand at 23.484 kb on + strand at 23.484 kb on + strand at 23.484 kb on + strand at 23.485 kb on - strand at 23.485 kb on - strand at 23.490 kb on + strand at 23.490 kb on + strand at 23.490 kb on + strand at 23.490 kb on + strand at 23.535 kb on - strand at 23.573 kb on + strand at 23.574 kb on - strand at 23.574 kb on - strand at 23.574 kb on - strand at 23.586 kb on + strand at 23.586 kb on + strand at 23.587 kb on - strand at 23.587 kb on - strand at 23.589 kb on + strand at 23.589 kb on + strand at 23.589 kb on + strand at 23.589 kb on + strand at 23.589 kb on + strand at 23.590 kb on - strand at 23.590 kb on - strand at 23.590 kb on - strand at 23.590 kb on - strand at 23.593 kb on + strand at 23.593 kb on + strand at 23.593 kb on + strand at 23.593 kb on + strand at 23.593 kb on + strand at 23.593 kb on + strand at 23.593 kb on + strand at 23.594 kb on - strand at 23.594 kb on - strand at 23.594 kb on - strand at 23.594 kb on - strand at 23.693 kb on + strand at 23.693 kb on + strand at 23.745 kb on + strand at 23.745 kb on + strand at 23.835 kb on + strand at 23.835 kb on + strand at 23.835 kb on + strand at 23.836 kb on - strand at 23.836 kb on - strand at 23.888 kb on + strand at 23.953 kb on + strand at 23.953 kb on + strand at 23.953 kb on + strand at 23.953 kb on + strand at 23.953 kb on + strand at 23.953 kb on + strand at 23.954 kb on - strand at 23.954 kb on - strand at 23.954 kb on - strand at 23.954 kb on - strand at 23.954 kb on - strand at 23.954 kb on - strand at 23.955 kb on + strand at 23.955 kb on + strand at 23.956 kb on - strand at 23.956 kb on - strand at 23.956 kb on - strand at 23.956 kb on - strand at 23.956 kb on - strand at 23.956 kb on - strand at 24.085 kb on + strand, within COO64_RS21330 at 24.086 kb on - strand, within COO64_RS21330 at 24.086 kb on - strand, within COO64_RS21330 at 24.086 kb on - strand, within COO64_RS21330 at 24.086 kb on - strand, within COO64_RS21330 at 24.086 kb on - strand, within COO64_RS21330 at 24.088 kb on + strand, within COO64_RS21330 at 24.457 kb on - strand, within COO64_RS21330 at 24.457 kb on - strand, within COO64_RS21330 at 24.457 kb on - strand, within COO64_RS21330 at 24.522 kb on + strand, within COO64_RS21330 at 24.523 kb on - strand, within COO64_RS21330 at 24.531 kb on + strand, within COO64_RS21330 at 24.532 kb on - strand, within COO64_RS21330 at 24.532 kb on - strand, within COO64_RS21330 at 24.537 kb on + strand, within COO64_RS21330 at 24.537 kb on + strand, within COO64_RS21330 at 24.537 kb on + strand, within COO64_RS21330 at 24.537 kb on + strand, within COO64_RS21330 at 24.559 kb on + strand, within COO64_RS21330 at 24.559 kb on + strand, within COO64_RS21330 at 24.559 kb on + strand, within COO64_RS21330 at 24.559 kb on + strand, within COO64_RS21330 at 24.559 kb on + strand, within COO64_RS21330 at 24.831 kb on + strand at 24.831 kb on + strand at 24.831 kb on + strand at 24.832 kb on - strand at 24.832 kb on - strand at 24.832 kb on - strand at 24.832 kb on - strand at 24.832 kb on - strand at 24.832 kb on - strand at 24.855 kb on - strand at 24.855 kb on - strand at 24.855 kb on - strand at 24.855 kb on - strand at 24.855 kb on - strand at 24.855 kb on - strand at 24.858 kb on + strand at 24.858 kb on + strand at 24.858 kb on + strand at 24.858 kb on + strand at 24.858 kb on + strand at 24.859 kb on - strand at 24.859 kb on - strand at 24.859 kb on - strand at 24.859 kb on - strand at 24.859 kb on - strand at 24.859 kb on - strand at 24.904 kb on + strand at 24.904 kb on + strand at 24.904 kb on + strand at 24.904 kb on + strand at 24.904 kb on + strand at 24.904 kb on + strand at 24.995 kb on + strand at 24.995 kb on + strand at 24.995 kb on + strand at 24.995 kb on + strand at 24.995 kb on + strand at 24.996 kb on - strand at 24.996 kb on - strand at 24.996 kb on - strand at 24.996 kb on - strand at 25.000 kb on + strand at 25.000 kb on + strand at 25.044 kb on + strand at 25.044 kb on + strand at 25.044 kb on + strand at 25.044 kb on + strand at 25.044 kb on + strand at 25.051 kb on + strand at 25.052 kb on - strand at 25.052 kb on - strand at 25.127 kb on + strand at 25.127 kb on + strand at 25.127 kb on + strand at 25.127 kb on + strand at 25.127 kb on + strand at 25.128 kb on - strand at 25.128 kb on - strand at 25.128 kb on - strand at 25.128 kb on - strand at 25.213 kb on + strand at 25.214 kb on - strand at 25.229 kb on + strand at 25.301 kb on + strand at 25.793 kb on - strand, within COO64_RS21335 at 25.793 kb on - strand, within COO64_RS21335
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Pseudomonas DC3000 1:1 with Pseudomonas_SVBP6_ML3 in M9 remove 23,017 - COO64_RS21325 0.42 +0.2 23,017 - COO64_RS21325 0.42 +0.3 23,184 + COO64_RS21325 0.61 -0.0 23,184 + COO64_RS21325 0.61 +1.4 23,238 + COO64_RS21325 0.68 +0.9 23,238 + COO64_RS21325 0.68 +1.8 23,238 + COO64_RS21325 0.68 +0.5 23,238 + COO64_RS21325 0.68 -1.1 23,239 - COO64_RS21325 0.68 +1.0 23,298 + COO64_RS21325 0.75 -0.4 23,299 - COO64_RS21325 0.75 -0.3 23,299 - COO64_RS21325 0.75 +1.0 23,299 - COO64_RS21325 0.75 +0.7 23,353 - COO64_RS21325 0.81 +1.7 23,353 - COO64_RS21325 0.81 +0.2 23,484 + +0.6 23,484 + +0.4 23,484 + +1.6 23,484 + +1.2 23,484 + +0.9 23,484 + +0.4 23,484 + +1.9 23,484 + +1.7 23,484 + +0.3 23,484 + +0.8 23,484 + +0.9 23,485 - +1.0 23,485 - +0.4 23,490 + +1.3 23,490 + +1.1 23,490 + +0.1 23,490 + +2.0 23,535 - +0.4 23,573 + +1.5 23,574 - +1.8 23,574 - +0.5 23,574 - +1.0 23,586 + +0.6 23,586 + +1.0 23,587 - +0.7 23,587 - +1.0 23,589 + -0.1 23,589 + +0.6 23,589 + +0.7 23,589 + +1.1 23,589 + +0.1 23,590 - +0.9 23,590 - +0.4 23,590 - +0.5 23,590 - +0.3 23,593 + +1.7 23,593 + +1.0 23,593 + -0.2 23,593 + +0.8 23,593 + +1.0 23,593 + +1.4 23,593 + +1.7 23,594 - +1.0 23,594 - -0.4 23,594 - +0.4 23,594 - +1.9 23,693 + +0.1 23,693 + -0.7 23,745 + -0.6 23,745 + -0.7 23,835 + -0.0 23,835 + +0.6 23,835 + -0.7 23,836 - -0.4 23,836 - +1.2 23,888 + -0.4 23,953 + -0.2 23,953 + -0.1 23,953 + -0.6 23,953 + -0.6 23,953 + -0.0 23,953 + -0.6 23,954 - +0.6 23,954 - -1.0 23,954 - -0.1 23,954 - -0.0 23,954 - +0.4 23,954 - -0.1 23,955 + -1.0 23,955 + -0.7 23,956 - -1.0 23,956 - +0.8 23,956 - +0.1 23,956 - -1.1 23,956 - -0.6 23,956 - -1.2 24,085 + COO64_RS21330 0.14 -1.5 24,086 - COO64_RS21330 0.14 -0.4 24,086 - COO64_RS21330 0.14 -0.0 24,086 - COO64_RS21330 0.14 -0.1 24,086 - COO64_RS21330 0.14 -1.0 24,086 - COO64_RS21330 0.14 -0.8 24,088 + COO64_RS21330 0.14 -0.4 24,457 - COO64_RS21330 0.54 -0.9 24,457 - COO64_RS21330 0.54 -0.6 24,457 - COO64_RS21330 0.54 -0.6 24,522 + COO64_RS21330 0.61 +0.1 24,523 - COO64_RS21330 0.61 -0.7 24,531 + COO64_RS21330 0.62 -0.9 24,532 - COO64_RS21330 0.62 -0.6 24,532 - COO64_RS21330 0.62 -0.7 24,537 + COO64_RS21330 0.62 +0.3 24,537 + COO64_RS21330 0.62 -0.7 24,537 + COO64_RS21330 0.62 -1.4 24,537 + COO64_RS21330 0.62 -0.3 24,559 + COO64_RS21330 0.65 -0.6 24,559 + COO64_RS21330 0.65 +0.4 24,559 + COO64_RS21330 0.65 -0.3 24,559 + COO64_RS21330 0.65 -0.1 24,559 + COO64_RS21330 0.65 -0.3 24,831 + -0.5 24,831 + -1.0 24,831 + +1.0 24,832 - -0.6 24,832 - -1.0 24,832 - +0.1 24,832 - -0.6 24,832 - +0.0 24,832 - -0.8 24,855 - -0.1 24,855 - -0.1 24,855 - -1.0 24,855 - -0.7 24,855 - +0.4 24,855 - +0.1 24,858 + -0.3 24,858 + -1.3 24,858 + -1.3 24,858 + -0.2 24,858 + -0.3 24,859 - +0.0 24,859 - -0.9 24,859 - -0.3 24,859 - -0.5 24,859 - -1.0 24,859 - +0.4 24,904 + -0.8 24,904 + -0.8 24,904 + -1.3 24,904 + -1.0 24,904 + -0.7 24,904 + -0.7 24,995 + -1.0 24,995 + -1.0 24,995 + +0.1 24,995 + -0.2 24,995 + +0.5 24,996 - +0.1 24,996 - +0.9 24,996 - -0.6 24,996 - -0.3 25,000 + -0.8 25,000 + -0.8 25,044 + +0.5 25,044 + -1.7 25,044 + -0.1 25,044 + -1.9 25,044 + -0.8 25,051 + -0.4 25,052 - +0.2 25,052 - +2.8 25,127 + +0.7 25,127 + -0.6 25,127 + -0.5 25,127 + -0.4 25,127 + -0.1 25,128 - +1.2 25,128 - +1.4 25,128 - +0.9 25,128 - +0.9 25,213 + -0.8 25,214 - +0.4 25,229 + +1.0 25,301 + -1.0 25,793 - COO64_RS21335 0.20 +0.3 25,793 - COO64_RS21335 0.20 +0.5
Or see this region's nucleotide sequence