Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5748

Experiment: Ying_all64 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5746 and GFF5747 overlap by 4 nucleotidesGFF5747 and GFF5748 overlap by 4 nucleotidesGFF5748 and GFF5749 are separated by 85 nucleotidesGFF5749 and GFF5750 overlap by 4 nucleotides GFF5746 - ABC-type antimicrobial peptide transport system, permease component, at 2,771,184 to 2,772,407 GFF5746 GFF5747 - Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1), at 2,772,404 to 2,773,063 GFF5747 GFF5748 - Zinc uptake regulation protein ZUR, at 2,773,060 to 2,773,539 GFF5748 GFF5749 - Zinc ABC transporter, ATP-binding protein ZnuC, at 2,773,625 to 2,774,410 GFF5749 GFF5750 - Zinc ABC transporter, inner membrane permease protein ZnuB, at 2,774,407 to 2,775,276 GFF5750 Position (kb) 2773 2774Strain fitness (log2 ratio) -1 0 1at 2772.380 kb on - strandat 2773.039 kb on - strandat 2773.039 kb on - strandat 2773.039 kb on - strandat 2773.698 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1
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2,772,380 - -0.3
2,773,039 - -0.0
2,773,039 - +0.7
2,773,039 - +0.2
2,773,698 - -0.2

Or see this region's nucleotide sequence