Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5730

Experiment: Ying_all64 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 1
2,758,553	+		GFF5729	0.42	+0.2
2,758,868	+		GFF5729	0.65	+0.2
2,758,869	-		GFF5729	0.65	+0.4
2,758,946	-		GFF5729	0.71	-0.3
2,758,946	-		GFF5729	0.71	-0.5
2,759,277	+				+0.4
2,759,277	+				+0.0
2,759,278	-				-0.2
2,759,278	-				+0.2
2,759,278	-				+0.3
2,759,278	-				-0.8
2,759,333	+				+0.2
2,759,333	+				-0.5
2,759,333	+				-0.1
2,759,333	+				-0.9
2,759,334	-				-0.2
2,759,334	-				-0.3
2,759,334	-				+0.3
2,759,334	-				-0.1
2,759,334	-				+1.1
2,759,334	-				-0.4
2,759,432	+				+0.3
2,759,433	-				-0.4
2,759,433	-				-0.6
2,759,576	+		GFF5730	0.17	+0.2
2,759,576	+		GFF5730	0.17	-1.3
2,759,577	-		GFF5730	0.17	-0.7
2,759,642	+		GFF5730	0.21	-0.4
2,759,642	+		GFF5730	0.21	+0.1
2,759,642	+		GFF5730	0.21	-1.5
2,759,642	+		GFF5730	0.21	+0.1
2,759,643	-		GFF5730	0.21	-2.5
2,759,643	-		GFF5730	0.21	-0.3
2,759,643	-		GFF5730	0.21	+1.0
2,759,643	-		GFF5730	0.21	-0.4
2,759,775	-		GFF5730	0.29	-0.3
2,759,838	-		GFF5730	0.33	-0.5
2,759,838	-		GFF5730	0.33	-0.1
2,759,937	-		GFF5730	0.39	+0.0
2,759,937	-		GFF5730	0.39	-0.1
2,760,191	+		GFF5730	0.55	-0.3
2,760,191	+		GFF5730	0.55	-0.1
2,760,191	+		GFF5730	0.55	+0.4
2,760,191	+		GFF5730	0.55	-0.2
2,760,191	+		GFF5730	0.55	-0.3
2,760,191	+		GFF5730	0.55	-0.3
2,760,191	+		GFF5730	0.55	-0.1
2,760,191	+		GFF5730	0.55	+0.1
2,760,191	+		GFF5730	0.55	-0.0
2,760,192	-		GFF5730	0.55	+0.4
2,760,192	-		GFF5730	0.55	-0.3
2,760,192	-		GFF5730	0.55	+0.6
2,760,192	-		GFF5730	0.55	+0.7
2,760,192	-		GFF5730	0.55	+0.4
2,760,192	-		GFF5730	0.55	-0.1
2,760,192	-		GFF5730	0.55	-0.5
2,760,192	-		GFF5730	0.55	-0.9
2,760,192	-		GFF5730	0.55	+0.0
2,760,192	-		GFF5730	0.55	-0.4
2,760,192	-		GFF5730	0.55	-0.5
2,760,192	-		GFF5730	0.55	-1.3
2,760,192	-		GFF5730	0.55	-0.8
2,760,192	-		GFF5730	0.55	-0.5
2,760,192	-		GFF5730	0.55	+0.3
2,760,200	+		GFF5730	0.56	+0.0
2,760,200	+		GFF5730	0.56	+0.3
2,760,200	+		GFF5730	0.56	+0.1
2,760,200	+		GFF5730	0.56	+0.9
2,760,200	+		GFF5730	0.56	-0.5
2,760,200	+		GFF5730	0.56	-0.9
2,760,201	-		GFF5730	0.56	+0.1
2,760,201	-		GFF5730	0.56	+0.3
2,760,269	+		GFF5730	0.60	-0.4
2,760,269	+		GFF5730	0.60	-0.2
2,760,293	+		GFF5730	0.62	+0.4
2,760,293	+		GFF5730	0.62	-1.6
2,760,293	+		GFF5730	0.62	-0.1
2,760,293	+		GFF5730	0.62	-0.1
2,760,294	-		GFF5730	0.62	-0.9
2,760,294	-		GFF5730	0.62	-1.2
2,760,294	-		GFF5730	0.62	+0.5
2,760,294	-		GFF5730	0.62	-0.8
2,760,294	-		GFF5730	0.62	+0.6
2,760,294	-		GFF5730	0.62	+0.1
2,760,722	+		GFF5730	0.89	+0.1
2,760,722	+		GFF5730	0.89	-0.9
2,760,722	+		GFF5730	0.89	-0.2
2,760,722	+		GFF5730	0.89	-0.6
2,760,722	+		GFF5730	0.89	-1.0
2,760,722	+		GFF5730	0.89	-0.3
2,760,723	-		GFF5730	0.89	+0.8
2,760,723	-		GFF5730	0.89	-0.1
2,760,806	+				-0.3
2,760,806	+				-0.4
2,760,806	+				-0.0
2,760,807	-				-0.4
2,760,807	-				-0.1
2,760,807	-				+0.2
2,760,906	+				-0.3
2,760,906	+				-0.1
2,760,906	+				-0.0
2,760,906	+				+0.4
2,760,907	-				+0.2
2,760,907	-				+0.1
2,760,907	-				+0.3
2,761,017	-				-0.5
2,761,091	+		GFF5731	0.16	-0.8
2,761,091	+		GFF5731	0.16	+0.5
2,761,091	+		GFF5731	0.16	+0.7
2,761,091	+		GFF5731	0.16	-0.6
2,761,091	+		GFF5731	0.16	-0.4
2,761,091	+		GFF5731	0.16	-1.3
2,761,091	+		GFF5731	0.16	+0.2
2,761,092	-		GFF5731	0.16	-0.2
2,761,092	-		GFF5731	0.16	-0.0
2,761,092	-		GFF5731	0.16	-0.1
2,761,092	-		GFF5731	0.16	-0.4
2,761,160	+		GFF5731	0.28	-0.7
2,761,160	+		GFF5731	0.28	-0.3
2,761,161	-		GFF5731	0.28	-0.2
2,761,161	-		GFF5731	0.28	-0.3
2,761,161	-		GFF5731	0.28	-0.9
2,761,181	+		GFF5731	0.31	-1.2
2,761,181	+		GFF5731	0.31	-0.9
2,761,181	+		GFF5731	0.31	-0.8
2,761,181	+		GFF5731	0.31	-1.5
2,761,182	-		GFF5731	0.32	+0.5
2,761,182	-		GFF5731	0.32	+0.5
2,761,182	-		GFF5731	0.32	-0.8
2,761,182	-		GFF5731	0.32	-0.5
2,761,182	-		GFF5731	0.32	-2.6
2,761,250	+		GFF5731	0.43	-0.5
2,761,250	+		GFF5731	0.43	-0.9
2,761,250	+		GFF5731	0.43	+1.0
2,761,250	+		GFF5731	0.43	-0.3
2,761,251	-		GFF5731	0.43	-0.2
2,761,251	-		GFF5731	0.43	-0.7
2,761,839	+		GFF5732	0.14	-0.3
2,761,839	+		GFF5732	0.14	-0.4
2,761,839	+		GFF5732	0.14	-0.2
2,761,839	+		GFF5732	0.14	-0.3
2,761,840	-		GFF5732	0.14	-0.3
2,761,840	-		GFF5732	0.14	-0.2
2,761,840	-		GFF5732	0.14	-0.4