Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5717

Experiment: Ying_all64 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 1
2,741,490	-		GFF5715	0.82	+0.7
2,741,490	-		GFF5715	0.82	-0.5
2,741,871	+		GFF5716	0.26	+0.6
2,741,898	+		GFF5716	0.29	+0.4
2,741,898	+		GFF5716	0.29	+0.3
2,741,898	+		GFF5716	0.29	-0.0
2,741,899	-		GFF5716	0.30	+0.4
2,742,450	+				-0.1
2,742,450	+				+1.0
2,742,450	+				+0.2
2,742,450	+				+1.2
2,742,451	-				+0.3
2,742,451	-				-0.8
2,742,650	+		GFF5717	0.27	+0.3
2,742,651	-		GFF5717	0.27	+1.2
2,742,651	-		GFF5717	0.27	+1.0
2,742,678	-		GFF5717	0.31	-0.5
2,742,717	-		GFF5717	0.37	-0.0
2,742,717	-		GFF5717	0.37	-0.1
2,742,717	-		GFF5717	0.37	-1.5
2,742,860	+		GFF5717	0.58	+0.4
2,742,861	-		GFF5717	0.58	-1.2
2,742,884	+		GFF5717	0.62	+0.3
2,742,884	+		GFF5717	0.62	+0.2
2,742,885	-		GFF5717	0.62	+0.0
2,742,885	-		GFF5717	0.62	-1.0
2,743,022	+		GFF5717	0.82	-0.3
2,743,023	-		GFF5717	0.83	-0.2
2,743,023	-		GFF5717	0.83	-0.1
2,743,084	+				+0.1
2,743,101	-				+0.0
2,743,101	-				-1.4
2,743,317	+				-1.6
2,743,401	+				-0.3
2,743,401	+				+0.4
2,744,022	+		GFF5718	0.23	-0.2
2,744,076	+		GFF5718	0.24	+0.5
2,744,077	-		GFF5718	0.24	+0.2