Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5464

Experiment: Ying_all64 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 1
2,465,895	+		GFF5463	0.15	+0.3
2,465,895	+		GFF5463	0.15	-0.5
2,465,895	+		GFF5463	0.15	-0.4
2,465,895	+		GFF5463	0.15	+0.2
2,465,895	+		GFF5463	0.15	+1.2
2,465,896	-		GFF5463	0.15	+1.0
2,465,896	-		GFF5463	0.15	-0.7
2,465,896	-		GFF5463	0.15	-0.2
2,466,015	+		GFF5463	0.28	+0.3
2,466,016	-		GFF5463	0.28	+0.1
2,466,570	+		GFF5463	0.88	-0.2
2,466,571	-		GFF5463	0.88	-0.1
2,466,595	-				-2.8
2,466,606	+				+0.3
2,466,606	+				+0.7
2,466,606	+				-0.5
2,466,606	+				+0.7
2,466,606	+				+0.5
2,466,606	+				+0.2
2,466,606	+				+0.9
2,466,606	+				+0.2
2,466,607	-				+0.4
2,466,607	-				+0.2
2,466,607	-				-0.2
2,466,607	-				+0.2
2,466,674	-				-2.0
2,466,690	-				+0.0
2,466,690	-				+0.5
2,466,898	+				-0.4
2,467,010	-		GFF5464	0.17	-1.2
2,467,010	-		GFF5464	0.17	+0.7
2,467,614	+				-0.8
2,467,646	-				-0.2
2,467,655	+				+0.7
2,467,655	+				-0.3
2,467,656	-				+0.7
2,467,970	+		GFF5465	0.29	-0.5
2,467,971	-		GFF5465	0.29	-0.2
2,468,129	+		GFF5465	0.47	+0.0
2,468,130	-		GFF5465	0.47	+1.0
2,468,130	-		GFF5465	0.47	-1.0
2,468,205	-		GFF5465	0.55	+1.0
2,468,205	-		GFF5465	0.55	+0.2
2,468,211	-		GFF5465	0.56	-0.5