Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5001

Experiment: Ying_all64 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 1
2,016,393	+		GFF5000	0.44	+0.8
2,016,394	-		GFF5000	0.44	+0.2
2,016,528	+		GFF5000	0.60	+0.0
2,016,528	+		GFF5000	0.60	+0.3
2,016,843	+				-0.4
2,016,844	-				-0.7
2,016,844	-				+0.4
2,016,844	-				-0.1
2,017,135	-		GFF5001	0.18	-0.7
2,017,306	-		GFF5001	0.37	-0.9
2,017,542	+		GFF5001	0.62	-1.0
2,017,693	-		GFF5001	0.78	-0.3
2,017,693	-		GFF5001	0.78	+0.7
2,017,858	-				+0.1
2,017,858	-				-0.9
2,017,890	+				+0.2
2,017,891	-				+0.2
2,017,993	-		GFF5002	0.18	+0.9
2,018,630	+		GFF5003	0.42	-1.9
2,018,726	+		GFF5003	0.61	+0.2