Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4930

Experiment: Ying_all64 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 1
1,945,176	-		GFF4928	0.63	-0.1
1,945,532	-				+0.1
1,945,792	+				+0.5
1,945,792	-				-0.6
1,945,793	-				+0.1
1,945,793	-				+0.8
1,945,815	+				+0.4
1,945,815	+				-0.1
1,945,815	+				-0.2
1,945,815	+				+0.0
1,945,816	-				-0.1
1,945,816	-				+0.8
1,945,857	+				-0.2
1,945,857	+				-0.1
1,945,858	-				+0.8
1,945,858	-				+0.9
1,945,858	-				+0.1
1,945,858	-				-1.9
1,945,858	-				+1.4
1,946,050	+		GFF4930	0.11	-0.8
1,946,287	+		GFF4930	0.43	+0.2
1,946,287	+		GFF4930	0.43	-1.1
1,946,288	-		GFF4930	0.43	+0.5
1,946,288	-		GFF4930	0.43	-0.1
1,946,648	-				-0.9
1,946,674	+				-2.0
1,946,675	-				-1.3
1,946,675	-				-1.4
1,946,685	-				-0.5
1,946,883	+		GFF4931	0.13	+1.4
1,946,883	+		GFF4931	0.13	-0.1
1,946,883	+		GFF4931	0.13	-0.3
1,946,883	+		GFF4931	0.13	-0.2
1,946,884	-		GFF4931	0.13	+1.1
1,946,884	-		GFF4931	0.13	-0.3
1,947,054	+		GFF4931	0.25	-0.0
1,947,054	+		GFF4931	0.25	-0.3
1,947,186	+		GFF4931	0.34	+0.8
1,947,186	+		GFF4931	0.34	-1.1
1,947,186	+		GFF4931	0.34	+0.0
1,947,186	+		GFF4931	0.34	-0.9
1,947,327	+		GFF4931	0.44	+0.2