Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4801

Experiment: Ying_all64 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 1
1,813,200	+				-1.4
1,813,201	-				-0.6
1,813,206	+				-1.2
1,813,249	-				+0.2
1,813,269	+				-0.1
1,813,271	+				+0.1
1,813,271	+				+0.3
1,813,271	+				+0.6
1,813,272	-				+0.8
1,813,272	-				-0.0
1,813,356	+				+0.1
1,813,391	+		GFF4800	0.13	+0.4
1,813,391	+		GFF4800	0.13	-0.1
1,813,391	+		GFF4800	0.13	-0.2
1,813,391	+		GFF4800	0.13	+0.1
1,813,391	+		GFF4800	0.13	-0.1
1,813,392	-		GFF4800	0.14	-0.4
1,813,392	-		GFF4800	0.14	+0.7
1,813,392	-		GFF4800	0.14	+0.1
1,813,392	-		GFF4800	0.14	-0.3
1,813,453	-		GFF4800	0.24	+0.6
1,813,453	-		GFF4800	0.24	-0.5
1,813,453	-		GFF4800	0.24	-1.8
1,813,453	-		GFF4800	0.24	-1.4
1,813,547	+		GFF4800	0.41	-2.2
1,813,547	+		GFF4800	0.41	+0.7
1,813,551	+		GFF4800	0.42	-0.0
1,813,551	+		GFF4800	0.42	+0.1
1,813,552	-		GFF4800	0.42	+0.2
1,813,669	+		GFF4800	0.63	-0.7
1,813,670	-		GFF4800	0.63	+0.1
1,813,733	+		GFF4800	0.74	+0.3
1,813,733	+		GFF4800	0.74	-0.7
1,813,733	+		GFF4800	0.74	+0.3
1,813,733	+		GFF4800	0.74	-0.2
1,813,839	-				+0.5
1,813,839	-				+0.4
1,813,839	-				+0.1
1,813,839	-				+0.2
1,813,839	-				-0.9
1,814,029	+		GFF4801	0.24	-0.0
1,814,029	+		GFF4801	0.24	-0.7
1,814,029	+		GFF4801	0.24	-0.1
1,814,030	-		GFF4801	0.24	+0.8
1,814,098	+		GFF4801	0.36	+1.4
1,814,098	+		GFF4801	0.36	+0.4
1,814,098	+		GFF4801	0.36	-0.1
1,814,099	-		GFF4801	0.36	-0.1
1,814,099	-		GFF4801	0.36	+0.3
1,814,099	-		GFF4801	0.36	+0.2
1,814,152	+		GFF4801	0.45	+0.4
1,814,152	+		GFF4801	0.45	-0.6
1,814,153	-		GFF4801	0.45	-0.0
1,814,153	-		GFF4801	0.45	-1.6
1,814,524	+				+0.7
1,814,525	-				+0.8
1,814,545	+				+0.8
1,814,545	+				+0.5
1,814,546	-				-1.0
1,814,546	-				+0.0
1,814,546	-				+0.1
1,814,546	-				+0.2
1,814,620	+		GFF4802	0.11	-0.2
1,814,620	+		GFF4802	0.11	+0.7
1,814,620	+		GFF4802	0.11	-0.0
1,814,620	+		GFF4802	0.11	-0.2
1,814,621	-		GFF4802	0.11	+0.2
1,814,621	-		GFF4802	0.11	-0.5
1,814,686	+		GFF4802	0.17	-1.5
1,814,752	+		GFF4802	0.23	+0.4
1,814,753	-		GFF4802	0.23	+0.0
1,814,815	+		GFF4802	0.28	-0.3
1,814,815	+		GFF4802	0.28	-0.1
1,814,815	+		GFF4802	0.28	+0.4
1,814,816	-		GFF4802	0.28	-0.3
1,814,816	-		GFF4802	0.28	-0.2
1,814,816	-		GFF4802	0.28	+0.7
1,814,816	-		GFF4802	0.28	-1.0
1,814,816	-		GFF4802	0.28	-0.3
1,815,004	+		GFF4802	0.45	-0.2
1,815,004	+		GFF4802	0.45	-1.9
1,815,055	+		GFF4802	0.49	+0.1
1,815,124	+		GFF4802	0.55	+0.0
1,815,125	-		GFF4802	0.55	+0.1
1,815,386	-		GFF4802	0.78	+0.2
1,815,386	-		GFF4802	0.78	-0.5
1,815,407	-		GFF4802	0.80	+0.3
1,815,475	+		GFF4802	0.86	+0.6
1,815,476	-		GFF4802	0.86	-0.6
1,815,476	-		GFF4802	0.86	+0.1
1,815,476	-		GFF4802	0.86	-0.1
1,815,476	-		GFF4802	0.86	+0.5
1,815,478	+		GFF4802	0.86	+0.2