Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4620

Experiment: Ying_all64 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 1
1,566,908	-		GFF4619	0.41	-0.2
1,566,923	-		GFF4619	0.42	+0.2
1,566,923	-		GFF4619	0.42	-0.2
1,567,369	+		GFF4619	0.75	+0.0
1,567,369	+		GFF4619	0.75	+0.9
1,567,369	+		GFF4619	0.75	+0.5
1,567,370	-		GFF4619	0.75	+0.2
1,567,370	-		GFF4619	0.75	+2.0
1,567,556	-		GFF4619	0.89	+0.4
1,567,696	+				-0.5
1,567,696	+				-0.6
1,568,224	-		GFF4620	0.52	+0.5
1,568,295	+		GFF4620	0.59	-1.0
1,568,295	+		GFF4620	0.59	-0.6
1,568,296	-		GFF4620	0.59	-0.0
1,568,296	-		GFF4620	0.59	+0.3
1,568,296	-		GFF4620	0.59	+0.6
1,568,419	-		GFF4620	0.73	+0.1
1,568,569	-		GFF4620	0.88	-0.1
1,568,569	-		GFF4620	0.88	-0.1
1,568,688	-				+0.3
1,568,716	-				-0.5
1,568,786	+				+0.0
1,568,787	-				+0.1
1,568,831	+				-1.1
1,568,831	+				-0.1
1,568,831	+				-1.0
1,568,831	+				-0.9
1,568,831	+				+1.0
1,568,832	-				-0.2
1,568,832	-				-0.5
1,568,832	-				-1.0
1,569,047	+		GFF4621	0.20	-0.2
1,569,047	+		GFF4621	0.20	-0.2
1,569,048	-		GFF4621	0.20	+0.4
1,569,165	-		GFF4621	0.29	-0.1
1,569,207	-		GFF4621	0.32	-0.3
1,569,207	-		GFF4621	0.32	+0.3
1,569,516	-		GFF4621	0.55	-0.3
1,569,516	-		GFF4621	0.55	+0.4