Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4487

Experiment: Ying_all64 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 1
1,412,238	+		GFF4485	0.44	-0.0
1,412,238	+		GFF4485	0.44	+0.2
1,412,314	-		GFF4485	0.81	+0.2
1,412,314	-		GFF4485	0.81	+0.1
1,412,320	-		GFF4485	0.84	-0.3
1,412,350	-				+0.3
1,412,371	+				-0.6
1,412,372	-				+0.1
1,412,372	-				-0.3
1,412,723	-		GFF4486	0.51	-0.2
1,412,822	-		GFF4486	0.65	+0.3
1,413,088	-				+0.3
1,413,965	+		GFF4488	0.14	+0.1
1,413,966	-		GFF4488	0.14	+0.5
1,413,966	-		GFF4488	0.14	+0.5
1,414,155	-		GFF4488	0.33	-0.1
1,414,259	+		GFF4488	0.44	+0.2
1,414,259	+		GFF4488	0.44	+0.4
1,414,260	-		GFF4488	0.44	-0.1
1,414,260	-		GFF4488	0.44	-0.1
1,414,289	+		GFF4488	0.47	+0.1
1,414,290	-		GFF4488	0.47	-0.0
1,414,292	+		GFF4488	0.47	+0.5
1,414,292	+		GFF4488	0.47	+0.6
1,414,364	+		GFF4488	0.54	+0.2
1,414,365	-		GFF4488	0.54	+0.4
1,414,451	+		GFF4488	0.63	-0.0
1,414,451	+		GFF4488	0.63	-0.6
1,414,451	+		GFF4488	0.63	+0.4
1,414,598	+		GFF4488	0.78	+0.4
1,414,598	+		GFF4488	0.78	+0.6
1,414,599	-		GFF4488	0.78	-0.4
1,414,700	+		GFF4488	0.88	-0.4
1,414,700	+		GFF4488	0.88	-0.1