Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4395

Experiment: Ying_all64 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 1
1,322,680	+		GFF4393	0.62	-0.0
1,322,680	+		GFF4393	0.62	-1.7
1,322,680	+		GFF4393	0.62	+1.4
1,322,681	-		GFF4393	0.62	-0.4
1,322,681	-		GFF4393	0.62	+0.3
1,322,681	-		GFF4393	0.62	+1.6
1,322,681	-		GFF4393	0.62	-0.1
1,322,681	-		GFF4393	0.62	-0.1
1,322,681	-		GFF4393	0.62	-0.2
1,322,725	+		GFF4393	0.76	+0.5
1,322,902	+				-2.8
1,322,902	+				+0.8
1,322,902	+				-0.8
1,322,903	-				+1.3
1,322,903	-				-0.1
1,323,011	+				+0.3
1,323,160	+				-0.5
1,323,160	+				+0.4
1,323,160	+				-0.7
1,323,160	+				-0.5
1,323,161	-				-0.3
1,323,161	-				+0.1
1,323,161	-				+0.5
1,323,161	-				+0.8
1,323,250	+		GFF4394	0.31	-1.1
1,323,264	+		GFF4394	0.36	-0.0
1,323,265	-		GFF4394	0.36	-0.1
1,323,265	-		GFF4394	0.36	+0.2
1,323,355	+		GFF4394	0.67	-0.0
1,323,355	+		GFF4394	0.67	-0.2
1,323,355	+		GFF4394	0.67	+0.1
1,323,355	+		GFF4394	0.67	-0.5
1,323,355	+		GFF4394	0.67	+0.3
1,323,355	+		GFF4394	0.67	-0.6
1,323,356	-		GFF4394	0.67	+0.9
1,323,356	-		GFF4394	0.67	-0.0
1,323,356	-		GFF4394	0.67	+0.3
1,323,356	-		GFF4394	0.67	-0.7
1,323,356	-		GFF4394	0.67	-1.7
1,323,356	-		GFF4394	0.67	-0.4
1,323,356	-		GFF4394	0.67	-0.1
1,323,356	-		GFF4394	0.67	+0.4
1,323,369	+		GFF4394	0.71	+0.9
1,323,370	-		GFF4394	0.72	+0.6
1,323,454	+				-0.2
1,323,454	+				-0.1
1,323,454	+				+1.1
1,323,454	+				+0.2
1,323,454	+				-0.7
1,323,455	-				-0.0
1,323,455	-				-1.9
1,323,455	-				+0.5
1,323,455	-				+1.7
1,323,456	-				+0.1
1,323,497	+				-0.7
1,323,498	-				-0.1
1,323,499	+				-0.7
1,323,499	+				+0.1
1,323,499	+				-0.3
1,323,499	+				-1.4
1,323,499	+				-0.4
1,323,499	+				-0.8
1,323,499	+				-0.4
1,323,500	-				-1.2
1,323,500	-				+0.1
1,323,500	-				-0.4
1,323,500	-				+0.5
1,323,505	+				-1.2
1,323,512	+				+0.2
1,323,512	+				+1.9
1,323,512	+				+0.2
1,323,512	+				-0.2
1,323,512	+				-0.1
1,323,512	+				+0.7
1,323,512	+				+0.0
1,323,513	-				-0.1
1,323,513	-				-1.0
1,323,513	-				+0.3
1,323,515	-				-0.1
1,323,545	+				-0.5
1,323,546	-				+0.7
1,323,958	-		GFF4395	0.83	-0.6
1,324,053	+				-0.4
1,324,053	+				+0.5
1,324,054	-				+0.0
1,324,054	-				-0.5
1,324,054	-				-0.1
1,324,247	+				+0.4
1,324,264	+				+0.8
1,324,265	-				-1.1
1,324,265	-				-0.4
1,324,265	-				+0.2
1,324,301	-				-0.6
1,324,400	+				-0.4
1,324,400	+				-0.0
1,324,400	+				-0.7
1,324,401	-				+0.1
1,324,401	-				-0.4
1,324,406	+				+0.3
1,324,406	+				+0.6
1,324,406	+				-0.1
1,324,406	+				+0.6
1,324,406	+				-0.8
1,324,406	+				-0.2
1,324,406	+				+0.1
1,324,407	-				-1.4
1,324,407	-				+1.2
1,324,407	-				-0.3
1,324,407	-				-0.4
1,324,407	-				-0.5
1,324,407	-				+0.2
1,324,407	-				-1.1
1,324,407	-				+0.7
1,324,407	-				-0.4
1,324,407	-				+0.4
1,324,407	-				-1.0
1,324,445	+		GFF4396	0.11	+0.1
1,324,446	-		GFF4396	0.12	-0.9
1,324,446	-		GFF4396	0.12	-0.4
1,324,446	-		GFF4396	0.12	+0.0
1,324,466	+		GFF4396	0.14	-1.5
1,324,506	+		GFF4396	0.19	-2.1
1,324,506	+		GFF4396	0.19	-1.0
1,324,506	+		GFF4396	0.19	-0.1
1,324,506	+		GFF4396	0.19	-0.2
1,324,506	+		GFF4396	0.19	-0.1
1,324,506	+		GFF4396	0.19	+0.7
1,324,506	+		GFF4396	0.19	-0.7
1,324,506	+		GFF4396	0.19	-0.1
1,324,507	-		GFF4396	0.19	-0.8
1,324,507	-		GFF4396	0.19	-0.2
1,324,507	-		GFF4396	0.19	+0.7
1,324,507	-		GFF4396	0.19	+0.8
1,324,507	-		GFF4396	0.19	-1.3
1,324,799	+		GFF4396	0.57	-0.2
1,324,799	+		GFF4396	0.57	+0.2
1,324,799	+		GFF4396	0.57	-0.4
1,324,799	+		GFF4396	0.57	-0.1
1,324,800	-		GFF4396	0.57	+0.3
1,324,800	-		GFF4396	0.57	-0.1
1,324,841	-		GFF4396	0.62	+0.8
1,324,997	+		GFF4396	0.82	-0.0
1,324,998	-		GFF4396	0.82	-0.5
1,324,998	-		GFF4396	0.82	+0.1