Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4047

Experiment: Ying_all64 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4046 and GFF4047 are separated by 16 nucleotidesGFF4047 and GFF4048 are separated by 83 nucleotidesGFF4048 and GFF4049 overlap by 24 nucleotidesGFF4049 and GFF4050 are separated by 12 nucleotides GFF4046 - hypothetical protein, at 967,170 to 967,757 GFF4046 GFF4047 - hypothetical protein, at 967,774 to 968,436 GFF4047 GFF4048 - hypothetical protein, at 968,520 to 968,633 GFF4048 GFF4049 - hypothetical protein, at 968,610 to 969,227 GFF4049 GFF4050 - hypothetical protein, at 969,240 to 969,977 GFF4050 Position (kb) 967 968 969Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 966.779 kb on - strandat 967.023 kb on + strandat 967.023 kb on + strandat 967.023 kb on + strandat 967.023 kb on + strandat 967.064 kb on + strandat 967.064 kb on + strandat 967.064 kb on - strandat 967.065 kb on - strandat 967.065 kb on - strandat 967.065 kb on - strandat 967.065 kb on - strandat 967.106 kb on + strandat 967.106 kb on + strandat 967.106 kb on + strandat 967.106 kb on + strandat 967.107 kb on - strandat 967.107 kb on - strandat 967.148 kb on + strandat 967.148 kb on + strandat 967.148 kb on + strandat 967.148 kb on + strandat 967.148 kb on + strandat 967.148 kb on + strandat 967.148 kb on + strandat 967.148 kb on + strandat 967.149 kb on - strandat 967.149 kb on - strandat 967.149 kb on - strandat 967.149 kb on - strandat 967.149 kb on - strandat 967.149 kb on - strandat 967.149 kb on - strandat 967.209 kb on + strandat 967.209 kb on + strandat 967.209 kb on + strandat 967.209 kb on + strandat 967.210 kb on - strandat 967.210 kb on - strandat 967.210 kb on - strandat 967.210 kb on - strandat 967.389 kb on + strand, within GFF4046at 967.390 kb on - strand, within GFF4046at 967.390 kb on - strand, within GFF4046at 967.665 kb on + strand, within GFF4046at 967.665 kb on + strand, within GFF4046at 967.666 kb on - strand, within GFF4046at 967.666 kb on - strand, within GFF4046at 967.666 kb on - strand, within GFF4046at 967.871 kb on - strand, within GFF4047at 967.966 kb on + strand, within GFF4047at 967.966 kb on + strand, within GFF4047at 967.967 kb on - strand, within GFF4047at 967.971 kb on + strand, within GFF4047at 967.972 kb on - strand, within GFF4047at 967.972 kb on - strand, within GFF4047at 967.972 kb on - strand, within GFF4047at 968.059 kb on + strand, within GFF4047at 968.060 kb on - strand, within GFF4047at 968.060 kb on - strand, within GFF4047at 968.101 kb on + strand, within GFF4047at 968.101 kb on + strand, within GFF4047at 968.101 kb on + strand, within GFF4047at 968.102 kb on - strand, within GFF4047at 968.155 kb on + strand, within GFF4047at 968.155 kb on + strand, within GFF4047at 968.155 kb on + strand, within GFF4047at 968.155 kb on + strand, within GFF4047at 968.156 kb on - strand, within GFF4047at 968.156 kb on - strand, within GFF4047at 968.156 kb on - strand, within GFF4047at 968.156 kb on - strand, within GFF4047at 968.218 kb on + strand, within GFF4047at 968.218 kb on + strand, within GFF4047at 968.219 kb on - strand, within GFF4047at 968.219 kb on - strand, within GFF4047at 968.451 kb on + strandat 968.471 kb on + strandat 968.471 kb on + strandat 968.471 kb on + strandat 968.471 kb on + strandat 968.471 kb on + strandat 968.471 kb on + strandat 968.471 kb on + strandat 968.472 kb on - strandat 968.472 kb on - strandat 968.621 kb on - strandat 968.757 kb on + strand, within GFF4049at 968.757 kb on + strand, within GFF4049at 968.757 kb on + strand, within GFF4049at 968.758 kb on - strand, within GFF4049at 968.958 kb on + strand, within GFF4049at 968.958 kb on + strand, within GFF4049at 968.958 kb on + strand, within GFF4049at 968.959 kb on - strand, within GFF4049at 968.959 kb on - strand, within GFF4049at 968.959 kb on - strand, within GFF4049at 969.267 kb on + strandat 969.267 kb on + strandat 969.267 kb on + strandat 969.268 kb on - strandat 969.268 kb on - strandat 969.330 kb on + strand, within GFF4050at 969.330 kb on + strand, within GFF4050at 969.330 kb on + strand, within GFF4050at 969.331 kb on - strand, within GFF4050at 969.331 kb on - strand, within GFF4050at 969.331 kb on - strand, within GFF4050

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1
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966,779 - -0.9
967,023 + +0.0
967,023 + +0.4
967,023 + -0.3
967,023 + -0.3
967,064 + +0.6
967,064 + +0.3
967,064 - +0.6
967,065 - +0.2
967,065 - -0.1
967,065 - -0.3
967,065 - +0.9
967,106 + -0.4
967,106 + -0.0
967,106 + +0.1
967,106 + -0.6
967,107 - +0.7
967,107 - -0.1
967,148 + +0.1
967,148 + +0.2
967,148 + -0.6
967,148 + -0.1
967,148 + -0.5
967,148 + +0.4
967,148 + -0.0
967,148 + +0.3
967,149 - -0.2
967,149 - +0.3
967,149 - +1.1
967,149 - -0.5
967,149 - -0.1
967,149 - -0.4
967,149 - +0.9
967,209 + -0.6
967,209 + -0.6
967,209 + +0.0
967,209 + +2.2
967,210 - +0.1
967,210 - +0.2
967,210 - +1.1
967,210 - +0.2
967,389 + GFF4046 0.37 -0.6
967,390 - GFF4046 0.37 +0.3
967,390 - GFF4046 0.37 -0.3
967,665 + GFF4046 0.84 -0.4
967,665 + GFF4046 0.84 +0.7
967,666 - GFF4046 0.84 -0.4
967,666 - GFF4046 0.84 +0.2
967,666 - GFF4046 0.84 +0.7
967,871 - GFF4047 0.15 +0.1
967,966 + GFF4047 0.29 -0.5
967,966 + GFF4047 0.29 -0.1
967,967 - GFF4047 0.29 +0.2
967,971 + GFF4047 0.30 -0.5
967,972 - GFF4047 0.30 -0.7
967,972 - GFF4047 0.30 -0.7
967,972 - GFF4047 0.30 -0.0
968,059 + GFF4047 0.43 -0.1
968,060 - GFF4047 0.43 +1.2
968,060 - GFF4047 0.43 -3.2
968,101 + GFF4047 0.49 +0.8
968,101 + GFF4047 0.49 -1.2
968,101 + GFF4047 0.49 +0.2
968,102 - GFF4047 0.49 +0.1
968,155 + GFF4047 0.57 -0.3
968,155 + GFF4047 0.57 +0.2
968,155 + GFF4047 0.57 +0.1
968,155 + GFF4047 0.57 +0.3
968,156 - GFF4047 0.58 +0.0
968,156 - GFF4047 0.58 +0.6
968,156 - GFF4047 0.58 -0.9
968,156 - GFF4047 0.58 +0.8
968,218 + GFF4047 0.67 +1.1
968,218 + GFF4047 0.67 -0.2
968,219 - GFF4047 0.67 -0.8
968,219 - GFF4047 0.67 -0.5
968,451 + -0.2
968,471 + +0.5
968,471 + -0.5
968,471 + -0.5
968,471 + +0.7
968,471 + +0.8
968,471 + +0.6
968,471 + +0.4
968,472 - -0.4
968,472 - -0.4
968,621 - +0.3
968,757 + GFF4049 0.24 +0.8
968,757 + GFF4049 0.24 +0.0
968,757 + GFF4049 0.24 +1.0
968,758 - GFF4049 0.24 -0.5
968,958 + GFF4049 0.56 +0.2
968,958 + GFF4049 0.56 +0.4
968,958 + GFF4049 0.56 +0.5
968,959 - GFF4049 0.56 -0.3
968,959 - GFF4049 0.56 -0.0
968,959 - GFF4049 0.56 +0.1
969,267 + -0.1
969,267 + +0.0
969,267 + -0.2
969,268 - -0.9
969,268 - +0.4
969,330 + GFF4050 0.12 +0.9
969,330 + GFF4050 0.12 -0.8
969,330 + GFF4050 0.12 -1.6
969,331 - GFF4050 0.12 +1.1
969,331 - GFF4050 0.12 +0.6
969,331 - GFF4050 0.12 +0.1

Or see this region's nucleotide sequence