Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3994

Experiment: Ying_all64 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3993 and GFF3994 overlap by 11 nucleotidesGFF3994 and GFF3995 overlap by 17 nucleotides GFF3993 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62), at 908,728 to 910,107 GFF3993 GFF3994 - Dethiobiotin synthetase (EC 6.3.3.3), at 910,097 to 910,780 GFF3994 GFF3995 - 8-amino-7-oxononanoate synthase (EC 2.3.1.47), at 910,764 to 911,984 GFF3995 Position (kb) 910 911Strain fitness (log2 ratio) -1 0 1at 909.238 kb on + strand, within GFF3993at 909.238 kb on + strand, within GFF3993at 909.238 kb on + strand, within GFF3993at 909.238 kb on + strand, within GFF3993at 909.239 kb on - strand, within GFF3993at 909.239 kb on - strand, within GFF3993at 909.239 kb on - strand, within GFF3993at 909.442 kb on + strand, within GFF3993at 909.446 kb on + strand, within GFF3993at 909.447 kb on - strand, within GFF3993at 909.641 kb on - strand, within GFF3993at 909.653 kb on - strand, within GFF3993at 909.694 kb on + strand, within GFF3993at 909.694 kb on + strand, within GFF3993at 909.694 kb on + strand, within GFF3993at 909.695 kb on - strand, within GFF3993at 909.964 kb on + strand, within GFF3993at 909.964 kb on + strand, within GFF3993at 910.908 kb on + strand, within GFF3995at 910.908 kb on + strand, within GFF3995at 910.968 kb on + strand, within GFF3995at 911.073 kb on + strand, within GFF3995at 911.074 kb on - strand, within GFF3995at 911.088 kb on + strand, within GFF3995at 911.469 kb on + strand, within GFF3995at 911.469 kb on + strand, within GFF3995at 911.469 kb on + strand, within GFF3995at 911.470 kb on - strand, within GFF3995at 911.470 kb on - strand, within GFF3995at 911.565 kb on + strand, within GFF3995at 911.565 kb on + strand, within GFF3995at 911.566 kb on - strand, within GFF3995at 911.566 kb on - strand, within GFF3995at 911.572 kb on - strand, within GFF3995

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1
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909,238 + GFF3993 0.37 +0.0
909,238 + GFF3993 0.37 +0.8
909,238 + GFF3993 0.37 +0.1
909,238 + GFF3993 0.37 +0.8
909,239 - GFF3993 0.37 -0.1
909,239 - GFF3993 0.37 +0.2
909,239 - GFF3993 0.37 +0.3
909,442 + GFF3993 0.52 +0.2
909,446 + GFF3993 0.52 -0.0
909,447 - GFF3993 0.52 +0.1
909,641 - GFF3993 0.66 -0.4
909,653 - GFF3993 0.67 +0.8
909,694 + GFF3993 0.70 +0.1
909,694 + GFF3993 0.70 -1.3
909,694 + GFF3993 0.70 +0.1
909,695 - GFF3993 0.70 +0.8
909,964 + GFF3993 0.90 +0.7
909,964 + GFF3993 0.90 +0.4
910,908 + GFF3995 0.12 +0.4
910,908 + GFF3995 0.12 -0.4
910,968 + GFF3995 0.17 -1.2
911,073 + GFF3995 0.25 +0.5
911,074 - GFF3995 0.25 +0.1
911,088 + GFF3995 0.27 -0.1
911,469 + GFF3995 0.58 -0.3
911,469 + GFF3995 0.58 +0.0
911,469 + GFF3995 0.58 +0.7
911,470 - GFF3995 0.58 +0.2
911,470 - GFF3995 0.58 -0.5
911,565 + GFF3995 0.66 -0.9
911,565 + GFF3995 0.66 -0.2
911,566 - GFF3995 0.66 +0.9
911,566 - GFF3995 0.66 -0.4
911,572 - GFF3995 0.66 -0.8

Or see this region's nucleotide sequence