Experiment: Ying_all64 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3915 and GFF3916 are separated by 46 nucleotides GFF3916 and GFF3917 are separated by 5 nucleotides GFF3917 and GFF3918 are separated by 105 nucleotides GFF3918 and GFF3919 are separated by 119 nucleotides
GFF3915 - Alkyl hydroperoxide reductase protein F (EC 1.6.4.-), at 828,118 to 829,707
GFF3915
GFF3916 - Acetate permease ActP (cation/acetate symporter), at 829,754 to 831,451
GFF3916
GFF3917 - Putative membrane protein, clustering with ActP, at 831,457 to 831,765
GFF3917
GFF3918 - hypothetical protein, at 831,871 to 832,053
GFF3918
GFF3919 - FIG137360: hypothetical protein, at 832,173 to 832,994
GFF3919
Position (kb) 829
830
831
832 Strain fitness (log2 ratio) -1
0
1 at 828.805 kb on + strand, within GFF3915 at 828.805 kb on + strand, within GFF3915 at 828.806 kb on - strand, within GFF3915 at 828.806 kb on - strand, within GFF3915 at 828.806 kb on - strand, within GFF3915 at 828.889 kb on + strand, within GFF3915 at 828.889 kb on + strand, within GFF3915 at 828.889 kb on + strand, within GFF3915 at 828.889 kb on + strand, within GFF3915 at 828.889 kb on + strand, within GFF3915 at 828.889 kb on + strand, within GFF3915 at 828.890 kb on - strand, within GFF3915 at 828.890 kb on - strand, within GFF3915 at 829.403 kb on - strand, within GFF3915 at 829.597 kb on + strand at 829.597 kb on + strand at 829.597 kb on + strand at 829.598 kb on - strand at 829.598 kb on - strand at 829.598 kb on - strand at 829.598 kb on - strand at 829.917 kb on + strand at 829.918 kb on - strand at 829.918 kb on - strand at 830.131 kb on - strand, within GFF3916 at 830.250 kb on + strand, within GFF3916 at 830.250 kb on + strand, within GFF3916 at 830.251 kb on - strand, within GFF3916 at 830.251 kb on - strand, within GFF3916 at 830.251 kb on - strand, within GFF3916 at 830.251 kb on - strand, within GFF3916 at 830.487 kb on + strand, within GFF3916 at 830.487 kb on + strand, within GFF3916 at 830.487 kb on + strand, within GFF3916 at 830.487 kb on + strand, within GFF3916 at 830.488 kb on - strand, within GFF3916 at 830.488 kb on - strand, within GFF3916 at 830.488 kb on - strand, within GFF3916 at 830.493 kb on + strand, within GFF3916 at 830.837 kb on + strand, within GFF3916 at 830.874 kb on + strand, within GFF3916 at 830.874 kb on + strand, within GFF3916 at 830.874 kb on + strand, within GFF3916 at 830.874 kb on + strand, within GFF3916 at 830.874 kb on + strand, within GFF3916 at 830.874 kb on + strand, within GFF3916 at 830.875 kb on - strand, within GFF3916 at 830.875 kb on - strand, within GFF3916 at 830.875 kb on - strand, within GFF3916 at 830.875 kb on - strand, within GFF3916 at 830.875 kb on - strand, within GFF3916 at 830.875 kb on - strand, within GFF3916 at 830.917 kb on - strand, within GFF3916 at 830.977 kb on - strand, within GFF3916 at 830.977 kb on - strand, within GFF3916 at 831.141 kb on + strand, within GFF3916 at 831.141 kb on + strand, within GFF3916 at 831.210 kb on + strand, within GFF3916 at 831.210 kb on + strand, within GFF3916 at 831.210 kb on + strand, within GFF3916 at 831.211 kb on - strand, within GFF3916 at 831.211 kb on - strand, within GFF3916 at 831.211 kb on - strand, within GFF3916 at 831.315 kb on + strand at 831.315 kb on + strand at 831.315 kb on + strand at 831.315 kb on + strand at 831.315 kb on + strand at 831.316 kb on - strand at 831.316 kb on - strand at 831.316 kb on - strand at 831.316 kb on - strand at 831.316 kb on - strand at 831.316 kb on - strand at 831.524 kb on + strand, within GFF3917 at 831.524 kb on + strand, within GFF3917 at 831.524 kb on + strand, within GFF3917 at 831.654 kb on - strand, within GFF3917 at 831.654 kb on - strand, within GFF3917 at 831.654 kb on - strand, within GFF3917 at 831.656 kb on + strand, within GFF3917 at 831.656 kb on + strand, within GFF3917 at 831.656 kb on + strand, within GFF3917 at 831.657 kb on - strand, within GFF3917 at 831.723 kb on - strand, within GFF3917 at 831.723 kb on - strand, within GFF3917 at 831.803 kb on + strand at 831.817 kb on + strand at 831.817 kb on + strand at 831.817 kb on + strand at 831.818 kb on - strand at 831.872 kb on + strand at 831.872 kb on + strand at 831.873 kb on - strand at 831.873 kb on - strand at 832.062 kb on + strand at 832.062 kb on + strand at 832.062 kb on + strand at 832.062 kb on + strand at 832.063 kb on - strand at 832.063 kb on - strand at 832.177 kb on + strand at 832.177 kb on + strand at 832.327 kb on + strand, within GFF3919
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1 remove 828,805 + GFF3915 0.43 -0.1 828,805 + GFF3915 0.43 +0.3 828,806 - GFF3915 0.43 -0.3 828,806 - GFF3915 0.43 +0.8 828,806 - GFF3915 0.43 -0.6 828,889 + GFF3915 0.48 +0.4 828,889 + GFF3915 0.48 +0.7 828,889 + GFF3915 0.48 -0.2 828,889 + GFF3915 0.48 -0.8 828,889 + GFF3915 0.48 +0.6 828,889 + GFF3915 0.48 -0.7 828,890 - GFF3915 0.49 -0.6 828,890 - GFF3915 0.49 -0.5 829,403 - GFF3915 0.81 +0.0 829,597 + +0.1 829,597 + -0.9 829,597 + -0.5 829,598 - -0.4 829,598 - +0.0 829,598 - -0.3 829,598 - +0.1 829,917 + -0.1 829,918 - +0.8 829,918 - +0.3 830,131 - GFF3916 0.22 +0.6 830,250 + GFF3916 0.29 +0.1 830,250 + GFF3916 0.29 +0.3 830,251 - GFF3916 0.29 -0.1 830,251 - GFF3916 0.29 -0.1 830,251 - GFF3916 0.29 +0.9 830,251 - GFF3916 0.29 +0.1 830,487 + GFF3916 0.43 -0.6 830,487 + GFF3916 0.43 -0.0 830,487 + GFF3916 0.43 -0.1 830,487 + GFF3916 0.43 +1.6 830,488 - GFF3916 0.43 +0.2 830,488 - GFF3916 0.43 +0.3 830,488 - GFF3916 0.43 +0.8 830,493 + GFF3916 0.44 -0.1 830,837 + GFF3916 0.64 -0.7 830,874 + GFF3916 0.66 -0.2 830,874 + GFF3916 0.66 -0.1 830,874 + GFF3916 0.66 +0.4 830,874 + GFF3916 0.66 +0.2 830,874 + GFF3916 0.66 +1.1 830,874 + GFF3916 0.66 -0.9 830,875 - GFF3916 0.66 +0.1 830,875 - GFF3916 0.66 +0.3 830,875 - GFF3916 0.66 -0.5 830,875 - GFF3916 0.66 -1.3 830,875 - GFF3916 0.66 +0.0 830,875 - GFF3916 0.66 -0.1 830,917 - GFF3916 0.68 +0.3 830,977 - GFF3916 0.72 +0.7 830,977 - GFF3916 0.72 +0.1 831,141 + GFF3916 0.82 +0.3 831,141 + GFF3916 0.82 +0.7 831,210 + GFF3916 0.86 -0.8 831,210 + GFF3916 0.86 -1.5 831,210 + GFF3916 0.86 -0.2 831,211 - GFF3916 0.86 -0.1 831,211 - GFF3916 0.86 +0.4 831,211 - GFF3916 0.86 +0.2 831,315 + -1.0 831,315 + +1.1 831,315 + +0.1 831,315 + +0.2 831,315 + -1.1 831,316 - -0.2 831,316 - -1.3 831,316 - -0.0 831,316 - -0.3 831,316 - -0.5 831,316 - +0.6 831,524 + GFF3917 0.22 -0.1 831,524 + GFF3917 0.22 +0.5 831,524 + GFF3917 0.22 +0.5 831,654 - GFF3917 0.64 -0.1 831,654 - GFF3917 0.64 -0.2 831,654 - GFF3917 0.64 -0.0 831,656 + GFF3917 0.64 +0.0 831,656 + GFF3917 0.64 -0.1 831,656 + GFF3917 0.64 +0.5 831,657 - GFF3917 0.65 -0.1 831,723 - GFF3917 0.86 -0.1 831,723 - GFF3917 0.86 -0.2 831,803 + +0.8 831,817 + +0.1 831,817 + -0.2 831,817 + +0.1 831,818 - +0.7 831,872 + -0.1 831,872 + +0.5 831,873 - +1.2 831,873 - +0.6 832,062 + -0.3 832,062 + +0.4 832,062 + -0.1 832,062 + +0.3 832,063 - -0.9 832,063 - -0.8 832,177 + -0.4 832,177 + -0.3 832,327 + GFF3919 0.19 +0.5
Or see this region's nucleotide sequence