Experiment: Ying_all64 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3775 and GFF3776 are separated by 23 nucleotides GFF3776 and GFF3777 are separated by 1 nucleotides GFF3777 and GFF3778 are separated by 3 nucleotides
GFF3775 - Chlorogenate esterase, at 671,799 to 673,529
GFF3775
GFF3776 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 673,553 to 674,290
GFF3776
GFF3777 - ABC-type branched-chain amino acid transport systems, ATPase component, at 674,292 to 676,061
GFF3777
GFF3778 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 676,065 to 677,150
GFF3778
Position (kb) 674
675
676
677 Strain fitness (log2 ratio) -1
0
1 at 673.659 kb on + strand, within GFF3776 at 673.659 kb on + strand, within GFF3776 at 673.660 kb on - strand, within GFF3776 at 673.660 kb on - strand, within GFF3776 at 673.660 kb on - strand, within GFF3776 at 674.312 kb on - strand at 674.809 kb on - strand, within GFF3777 at 675.205 kb on + strand, within GFF3777 at 675.206 kb on - strand, within GFF3777 at 675.206 kb on - strand, within GFF3777 at 675.334 kb on + strand, within GFF3777 at 675.335 kb on - strand, within GFF3777 at 675.452 kb on - strand, within GFF3777 at 675.589 kb on - strand, within GFF3777 at 675.658 kb on + strand, within GFF3777 at 675.659 kb on - strand, within GFF3777 at 675.659 kb on - strand, within GFF3777 at 675.692 kb on - strand, within GFF3777 at 675.694 kb on + strand, within GFF3777 at 675.694 kb on + strand, within GFF3777 at 675.734 kb on - strand, within GFF3777 at 675.949 kb on + strand at 675.950 kb on - strand at 675.950 kb on - strand at 675.950 kb on - strand at 675.950 kb on - strand at 675.950 kb on - strand at 675.961 kb on + strand at 675.961 kb on + strand at 675.961 kb on + strand at 675.962 kb on - strand at 676.678 kb on + strand, within GFF3778 at 676.691 kb on - strand, within GFF3778 at 676.705 kb on + strand, within GFF3778 at 676.705 kb on + strand, within GFF3778 at 676.966 kb on + strand, within GFF3778 at 677.047 kb on + strand at 677.048 kb on - strand at 677.048 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1 remove 673,659 + GFF3776 0.14 -0.2 673,659 + GFF3776 0.14 -0.2 673,660 - GFF3776 0.14 +0.3 673,660 - GFF3776 0.14 +0.2 673,660 - GFF3776 0.14 +0.1 674,312 - -0.9 674,809 - GFF3777 0.29 -0.5 675,205 + GFF3777 0.52 +0.1 675,206 - GFF3777 0.52 -0.3 675,206 - GFF3777 0.52 -0.7 675,334 + GFF3777 0.59 +0.2 675,335 - GFF3777 0.59 -0.4 675,452 - GFF3777 0.66 -0.9 675,589 - GFF3777 0.73 +0.4 675,658 + GFF3777 0.77 -0.6 675,659 - GFF3777 0.77 -0.4 675,659 - GFF3777 0.77 -0.7 675,692 - GFF3777 0.79 +0.0 675,694 + GFF3777 0.79 -0.9 675,694 + GFF3777 0.79 -0.6 675,734 - GFF3777 0.81 +0.1 675,949 + +0.6 675,950 - +0.1 675,950 - -0.5 675,950 - +0.2 675,950 - -0.2 675,950 - -0.1 675,961 + -1.3 675,961 + -0.3 675,961 + -0.0 675,962 - -0.6 676,678 + GFF3778 0.56 +0.2 676,691 - GFF3778 0.58 +1.2 676,705 + GFF3778 0.59 +0.3 676,705 + GFF3778 0.59 +0.1 676,966 + GFF3778 0.83 -0.5 677,047 + -0.2 677,048 - -0.2 677,048 - -1.2
Or see this region's nucleotide sequence