Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3612

Experiment: Ying_all64 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3611 and GFF3612 are separated by 246 nucleotides GFF3611 - putative exported protein, at 497,813 to 498,793 GFF3611 GFF3612 - Outer membrane autotransporter barrel, at 499,040 to 500,776 GFF3612 Position (kb) 499 500 501Strain fitness (log2 ratio) -2 -1 0 1at 498.080 kb on + strand, within GFF3611at 498.080 kb on + strand, within GFF3611at 498.146 kb on + strand, within GFF3611at 498.285 kb on - strand, within GFF3611at 498.371 kb on + strand, within GFF3611at 498.372 kb on - strand, within GFF3611at 498.841 kb on + strandat 498.842 kb on - strandat 498.842 kb on - strandat 498.842 kb on - strandat 498.914 kb on + strandat 498.915 kb on - strandat 498.983 kb on + strandat 498.983 kb on + strandat 498.995 kb on + strandat 498.995 kb on + strandat 498.995 kb on + strandat 498.995 kb on + strandat 498.995 kb on + strandat 498.996 kb on - strandat 499.078 kb on - strandat 499.263 kb on - strand, within GFF3612at 499.352 kb on + strand, within GFF3612at 499.352 kb on + strand, within GFF3612at 499.352 kb on + strand, within GFF3612at 499.352 kb on + strand, within GFF3612at 499.352 kb on + strand, within GFF3612at 499.352 kb on + strand, within GFF3612at 499.352 kb on + strand, within GFF3612at 499.353 kb on - strand, within GFF3612at 499.353 kb on - strand, within GFF3612at 499.353 kb on - strand, within GFF3612at 499.388 kb on + strand, within GFF3612at 499.389 kb on - strand, within GFF3612at 499.481 kb on + strand, within GFF3612at 499.481 kb on + strand, within GFF3612at 499.481 kb on + strand, within GFF3612at 499.482 kb on - strand, within GFF3612at 499.482 kb on - strand, within GFF3612at 499.482 kb on - strand, within GFF3612at 499.482 kb on - strand, within GFF3612at 499.482 kb on - strand, within GFF3612at 499.577 kb on - strand, within GFF3612at 499.577 kb on - strand, within GFF3612at 499.577 kb on - strand, within GFF3612at 500.151 kb on - strand, within GFF3612at 500.160 kb on - strand, within GFF3612at 500.354 kb on + strand, within GFF3612at 500.354 kb on + strand, within GFF3612at 500.429 kb on + strand, within GFF3612at 500.429 kb on + strand, within GFF3612at 500.430 kb on - strand, within GFF3612at 500.484 kb on + strand, within GFF3612at 500.537 kb on + strand, within GFF3612at 500.537 kb on + strand, within GFF3612at 500.606 kb on + strandat 500.607 kb on - strandat 500.666 kb on + strandat 500.666 kb on + strandat 500.699 kb on + strandat 500.709 kb on - strandat 500.771 kb on + strandat 500.772 kb on - strandat 500.935 kb on + strandat 501.167 kb on - strandat 501.205 kb on + strandat 501.206 kb on - strandat 501.232 kb on + strandat 501.232 kb on + strandat 501.236 kb on - strandat 501.236 kb on - strandat 501.314 kb on - strandat 501.490 kb on + strandat 501.693 kb on + strandat 501.694 kb on - strandat 501.694 kb on - strandat 501.736 kb on + strandat 501.737 kb on - strandat 501.737 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1
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498,080 + GFF3611 0.27 -0.1
498,080 + GFF3611 0.27 +0.4
498,146 + GFF3611 0.34 +0.6
498,285 - GFF3611 0.48 +0.2
498,371 + GFF3611 0.57 +0.4
498,372 - GFF3611 0.57 +0.1
498,841 + -0.6
498,842 - +0.4
498,842 - +0.4
498,842 - -0.0
498,914 + +0.3
498,915 - +0.4
498,983 + -0.9
498,983 + +0.2
498,995 + +0.0
498,995 + +1.2
498,995 + -0.7
498,995 + +0.8
498,995 + -1.8
498,996 - +0.3
499,078 - +0.0
499,263 - GFF3612 0.13 +0.2
499,352 + GFF3612 0.18 -0.6
499,352 + GFF3612 0.18 -1.7
499,352 + GFF3612 0.18 +0.0
499,352 + GFF3612 0.18 -0.9
499,352 + GFF3612 0.18 -0.4
499,352 + GFF3612 0.18 +0.9
499,352 + GFF3612 0.18 +0.3
499,353 - GFF3612 0.18 -0.6
499,353 - GFF3612 0.18 -0.1
499,353 - GFF3612 0.18 -1.3
499,388 + GFF3612 0.20 -0.2
499,389 - GFF3612 0.20 -1.0
499,481 + GFF3612 0.25 +0.3
499,481 + GFF3612 0.25 -0.0
499,481 + GFF3612 0.25 -0.0
499,482 - GFF3612 0.25 +1.4
499,482 - GFF3612 0.25 +0.1
499,482 - GFF3612 0.25 +0.0
499,482 - GFF3612 0.25 -0.2
499,482 - GFF3612 0.25 +1.5
499,577 - GFF3612 0.31 +0.3
499,577 - GFF3612 0.31 -0.9
499,577 - GFF3612 0.31 -0.2
500,151 - GFF3612 0.64 -0.4
500,160 - GFF3612 0.64 +0.9
500,354 + GFF3612 0.76 +0.3
500,354 + GFF3612 0.76 +1.7
500,429 + GFF3612 0.80 -0.4
500,429 + GFF3612 0.80 -0.6
500,430 - GFF3612 0.80 +0.7
500,484 + GFF3612 0.83 -0.6
500,537 + GFF3612 0.86 +0.2
500,537 + GFF3612 0.86 +1.2
500,606 + +0.2
500,607 - -0.8
500,666 + +0.5
500,666 + -0.1
500,699 + +0.1
500,709 - +1.2
500,771 + +1.1
500,772 - +0.2
500,935 + +0.4
501,167 - -0.6
501,205 + -0.6
501,206 - +0.3
501,232 + +0.1
501,232 + +0.0
501,236 - +0.1
501,236 - +0.7
501,314 - +0.4
501,490 + +0.3
501,693 + -1.7
501,694 - +0.2
501,694 - +0.4
501,736 + +0.4
501,737 - +0.2
501,737 - -0.2

Or see this region's nucleotide sequence