Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3447

Experiment: Ying_all64 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 1
326,900	-				+1.1
326,900	-				-0.2
326,933	+		GFF3446	0.13	-1.9
326,933	+		GFF3446	0.13	-0.6
326,934	-		GFF3446	0.13	-0.1
326,936	+		GFF3446	0.13	+0.3
326,936	+		GFF3446	0.13	+0.8
326,937	-		GFF3446	0.13	-2.7
326,937	-		GFF3446	0.13	+0.8
327,041	+		GFF3446	0.26	+0.3
327,266	+		GFF3446	0.52	-0.1
327,477	-		GFF3446	0.76	+0.6
327,477	-		GFF3446	0.76	+0.2
327,793	+				+0.1
327,890	-				+0.3
327,890	-				+0.4
327,998	-		GFF3447	0.24	-0.4
328,114	+		GFF3447	0.40	-0.4
328,150	+		GFF3447	0.45	+0.6
328,151	-		GFF3447	0.45	+0.1
328,157	-		GFF3447	0.46	+0.4
328,324	+		GFF3447	0.70	-2.0
328,324	+		GFF3447	0.70	+0.8
328,324	+		GFF3447	0.70	+0.4
328,325	-		GFF3447	0.70	+0.0
328,325	-		GFF3447	0.70	+0.2
328,325	-		GFF3447	0.70	+1.1
328,326	-		GFF3447	0.70	-0.8
328,820	-		GFF3448	0.20	+0.6