Experiment: Ying_all64 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3296 and GFF3297 are separated by 30 nucleotides GFF3297 and GFF3298 overlap by 4 nucleotides GFF3298 and GFF3299 overlap by 15 nucleotides GFF3299 and GFF3300 are separated by 41 nucleotides
GFF3296 - Urease accessory protein UreD, at 181,452 to 182,285
GFF3296
GFF3297 - cytidine/deoxycytidylate deaminase family protein, at 182,316 to 182,807
GFF3297
GFF3298 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 182,804 to 183,838
GFF3298
GFF3299 - hypothetical protein, at 183,824 to 184,078
GFF3299
GFF3300 - Putative Rieske (2Fe-2S) family oxidoreductase, large subunit, at 184,120 to 185,139
GFF3300
Position (kb) 182
183
184 Strain fitness (log2 ratio) -1
0
1
2 at 182.038 kb on + strand, within GFF3296 at 182.980 kb on - strand, within GFF3298 at 182.980 kb on - strand, within GFF3298 at 183.264 kb on + strand, within GFF3298 at 183.495 kb on + strand, within GFF3298 at 183.495 kb on + strand, within GFF3298 at 183.496 kb on - strand, within GFF3298 at 183.504 kb on + strand, within GFF3298 at 183.504 kb on + strand, within GFF3298 at 183.667 kb on - strand, within GFF3298 at 183.667 kb on - strand, within GFF3298 at 183.903 kb on + strand, within GFF3299 at 183.904 kb on - strand, within GFF3299 at 183.904 kb on - strand, within GFF3299 at 183.904 kb on - strand, within GFF3299 at 183.904 kb on - strand, within GFF3299 at 183.956 kb on - strand, within GFF3299 at 184.033 kb on - strand, within GFF3299 at 184.099 kb on + strand at 184.436 kb on - strand, within GFF3300 at 184.459 kb on + strand, within GFF3300 at 184.666 kb on + strand, within GFF3300 at 184.793 kb on - strand, within GFF3300 at 184.795 kb on + strand, within GFF3300
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1 remove 182,038 + GFF3296 0.70 +1.0 182,980 - GFF3298 0.17 +0.5 182,980 - GFF3298 0.17 -1.6 183,264 + GFF3298 0.44 -1.6 183,495 + GFF3298 0.67 -0.1 183,495 + GFF3298 0.67 -0.6 183,496 - GFF3298 0.67 -0.7 183,504 + GFF3298 0.68 -0.5 183,504 + GFF3298 0.68 +0.7 183,667 - GFF3298 0.83 +0.8 183,667 - GFF3298 0.83 -0.9 183,903 + GFF3299 0.31 -0.7 183,904 - GFF3299 0.31 +0.2 183,904 - GFF3299 0.31 +0.5 183,904 - GFF3299 0.31 -0.6 183,904 - GFF3299 0.31 +1.5 183,956 - GFF3299 0.52 +0.5 184,033 - GFF3299 0.82 +0.9 184,099 + -1.1 184,436 - GFF3300 0.31 +0.6 184,459 + GFF3300 0.33 +0.4 184,666 + GFF3300 0.54 -0.1 184,793 - GFF3300 0.66 +1.8 184,795 + GFF3300 0.66 +1.2
Or see this region's nucleotide sequence