Experiment: Ying_all64 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3292 and GFF3293 are separated by 7 nucleotides GFF3293 and GFF3294 are separated by 123 nucleotides GFF3294 and GFF3295 are separated by 66 nucleotides
GFF3292 - Chromosome initiation inhibitor, at 177,410 to 178,318
GFF3292
GFF3293 - probable response regulator, at 178,326 to 180,020
GFF3293
GFF3294 - probable alpha helix chain yaiN, at 180,144 to 180,419
GFF3294
GFF3295 - Cobalt-zinc-cadmium resistance protein CzcD, at 180,486 to 181,433
GFF3295
Position (kb) 178
179
180
181 Strain fitness (log2 ratio) -1
0
1 at 177.380 kb on - strand at 177.415 kb on + strand at 177.461 kb on + strand at 177.918 kb on - strand, within GFF3292 at 179.104 kb on + strand, within GFF3293 at 179.105 kb on - strand, within GFF3293 at 179.105 kb on - strand, within GFF3293 at 179.105 kb on - strand, within GFF3293 at 179.105 kb on - strand, within GFF3293 at 179.245 kb on + strand, within GFF3293 at 179.317 kb on + strand, within GFF3293 at 179.446 kb on + strand, within GFF3293 at 179.447 kb on - strand, within GFF3293 at 179.447 kb on - strand, within GFF3293 at 179.512 kb on + strand, within GFF3293 at 179.512 kb on + strand, within GFF3293 at 179.521 kb on + strand, within GFF3293 at 179.521 kb on + strand, within GFF3293 at 179.522 kb on - strand, within GFF3293 at 179.522 kb on - strand, within GFF3293 at 179.722 kb on + strand, within GFF3293 at 179.723 kb on - strand, within GFF3293 at 180.154 kb on + strand at 180.447 kb on + strand at 180.628 kb on - strand, within GFF3295 at 180.706 kb on - strand, within GFF3295 at 180.706 kb on - strand, within GFF3295 at 180.780 kb on + strand, within GFF3295 at 180.781 kb on - strand, within GFF3295 at 180.781 kb on - strand, within GFF3295 at 180.781 kb on - strand, within GFF3295 at 180.781 kb on - strand, within GFF3295 at 180.826 kb on - strand, within GFF3295 at 180.867 kb on + strand, within GFF3295 at 180.867 kb on + strand, within GFF3295 at 180.868 kb on - strand, within GFF3295
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1 remove 177,380 - +0.1 177,415 + +0.2 177,461 + -0.2 177,918 - GFF3292 0.56 -0.5 179,104 + GFF3293 0.46 -0.8 179,105 - GFF3293 0.46 -0.3 179,105 - GFF3293 0.46 -0.1 179,105 - GFF3293 0.46 +0.2 179,105 - GFF3293 0.46 +0.0 179,245 + GFF3293 0.54 +0.2 179,317 + GFF3293 0.58 +1.1 179,446 + GFF3293 0.66 -0.5 179,447 - GFF3293 0.66 -0.4 179,447 - GFF3293 0.66 -0.8 179,512 + GFF3293 0.70 +0.1 179,512 + GFF3293 0.70 +0.8 179,521 + GFF3293 0.71 -1.4 179,521 + GFF3293 0.71 -0.3 179,522 - GFF3293 0.71 +0.1 179,522 - GFF3293 0.71 -0.4 179,722 + GFF3293 0.82 +0.3 179,723 - GFF3293 0.82 +0.2 180,154 + -0.3 180,447 + +0.1 180,628 - GFF3295 0.15 +0.6 180,706 - GFF3295 0.23 +0.2 180,706 - GFF3295 0.23 +0.1 180,780 + GFF3295 0.31 -0.6 180,781 - GFF3295 0.31 -0.0 180,781 - GFF3295 0.31 -0.1 180,781 - GFF3295 0.31 +0.4 180,781 - GFF3295 0.31 +0.7 180,826 - GFF3295 0.36 -0.7 180,867 + GFF3295 0.40 -0.1 180,867 + GFF3295 0.40 -0.4 180,868 - GFF3295 0.40 -0.3
Or see this region's nucleotide sequence