Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3240

Experiment: Ying_all64 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 1
121,319	+				-0.2
121,319	+				-0.0
121,320	-				+0.0
121,689	-				-0.8
121,689	-				-0.5
121,799	+				+0.4
121,799	+				+0.0
121,799	+				+1.7
121,800	-				+0.7
121,800	-				+0.7
121,929	+				+0.9
121,930	-				+0.1
121,930	-				+0.8
122,473	-		GFF3240	0.21	+0.2
122,492	-		GFF3240	0.23	+0.7
122,492	-		GFF3240	0.23	-0.0
122,492	-		GFF3240	0.23	+0.1
122,538	+		GFF3240	0.27	-0.2
122,556	+		GFF3240	0.29	+0.1
122,557	-		GFF3240	0.29	+0.4
122,971	-		GFF3240	0.68	+0.6
123,031	-		GFF3240	0.73	-0.8
123,031	-		GFF3240	0.73	-0.5
123,393	-		GFF3241	0.29	+0.2
123,455	+		GFF3241	0.51	-0.3
123,476	+		GFF3241	0.59	-0.1
123,520	-		GFF3241	0.75	-0.6
123,763	-				+1.1
123,913	-				+0.2
123,974	+				-0.2
124,172	+				-1.0
124,172	+				-0.2
124,173	-				-0.5
124,173	-				+0.6
124,298	+				-0.0
124,299	-				-0.2