Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3228

Experiment: Ying_all64 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 1
110,038	-		GFF3226	0.82	+0.0
110,321	+				+0.8
110,500	+				+0.3
110,512	+				+0.3
110,512	+				-0.4
110,664	-				+0.6
110,805	-		GFF3227	0.54	-0.6
110,870	+		GFF3227	0.84	+0.3
110,870	+		GFF3227	0.84	-0.3
110,873	-		GFF3227	0.85	-1.8
110,873	-		GFF3227	0.85	+0.3
110,944	+				+0.2
111,176	+		GFF3228	0.21	+0.8
111,230	+		GFF3228	0.26	-0.0
111,362	+		GFF3228	0.38	-0.1
111,797	+		GFF3228	0.78	+0.3
111,959	+				+0.3
112,123	+				+0.4
112,132	-				-0.3
112,230	+				-0.8
112,505	+		GFF3229	0.51	+1.3
112,532	+		GFF3229	0.56	-0.3
112,532	+		GFF3229	0.56	-0.1
112,586	+		GFF3229	0.66	+0.1
112,805	-				-0.2